Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d23
         (557 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98433-1|CAA67075.1|  117|Homo sapiens RNA polymerase II subunit...   194   1e-49
X82385-1|CAA57785.1|  117|Homo sapiens RNA polymerase II subunit...   194   1e-49
L37127-1|AAD05361.1|  117|Homo sapiens RNA polymerase II protein.     194   1e-49
BC141830-1|AAI41831.1|  117|Homo sapiens POLR2J protein protein.      194   1e-49
BC139902-1|AAI39903.1|  117|Homo sapiens polymerase (RNA) II (DN...   194   1e-49
BC065711-1|AAH65711.1|  117|Homo sapiens POLR2J protein protein.      194   1e-49
BC024165-1|AAH24165.1|  117|Homo sapiens polymerase (RNA) II (DN...   194   1e-49
AJ277932-1|CAC18368.1|  127|Homo sapiens RPB11a protein protein.      183   4e-46
AJ277931-1|CAC18332.1|  115|Homo sapiens RPB11b1alpha protein pr...   175   1e-43
AJ277739-1|CAC18329.1|  115|Homo sapiens RPB11b1alpha protein pr...   175   1e-43
AJ277741-1|CAC18331.1|  115|Homo sapiens RPB11b2alpha protein pr...   174   2e-43
AC004084-4|AAP22342.1|  115|Homo sapiens unknown protein.             174   2e-43
AF468111-1|AAL87672.1|  158|Homo sapiens DNA-directed RNA polyme...   173   3e-43
BC105584-1|AAI05585.1|  138|Homo sapiens POLR2J4 protein protein.     173   4e-43
BC017341-1|AAH17341.2|  160|Homo sapiens MGC13098 protein protein.    173   5e-43
BC017250-1|AAH17250.1|  179|Homo sapiens MGC13098 protein protein.    173   5e-43
AB209398-1|BAD92635.1|  180|Homo sapiens MGC13098 protein varian...   172   6e-43
BC062722-1|AAH62722.1|  130|Homo sapiens POLR2J4 protein protein.     171   2e-42
BC086857-1|AAH86857.1|  116|Homo sapiens DNA directed RNA polyme...    73   7e-13
AJ277740-1|CAC18330.1|  116|Homo sapiens RPB11b1beta protein pro...    73   7e-13
AC004084-3|AAP22341.1|   76|Homo sapiens unknown protein.              72   1e-12
BC000889-1|AAH00889.1|  133|Homo sapiens polymerase (RNA) I poly...    69   8e-12
AL136439-1|CAI16933.1|  133|Homo sapiens polymerase (RNA) I poly...    69   8e-12
AL355001-1|CAI16178.1|  493|Homo sapiens zinc finger, MYM-type 5...    29   8.4  
AL354808-2|CAI41001.1|  493|Homo sapiens zinc finger, MYM-type 5...    29   8.4  

>X98433-1|CAA67075.1|  117|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 117

 Score =  194 bits (474), Expect = 1e-49
 Identities = 85/117 (72%), Positives = 104/117 (88%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117


>X82385-1|CAA57785.1|  117|Homo sapiens RNA polymerase II subunit
           protein.
          Length = 117

 Score =  194 bits (474), Expect = 1e-49
 Identities = 85/117 (72%), Positives = 104/117 (88%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117


>L37127-1|AAD05361.1|  117|Homo sapiens RNA polymerase II protein.
          Length = 117

 Score =  194 bits (474), Expect = 1e-49
 Identities = 85/117 (72%), Positives = 104/117 (88%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117


>BC141830-1|AAI41831.1|  117|Homo sapiens POLR2J protein protein.
          Length = 117

 Score =  194 bits (474), Expect = 1e-49
 Identities = 85/117 (72%), Positives = 104/117 (88%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117


>BC139902-1|AAI39903.1|  117|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide J, 13.3kDa protein.
          Length = 117

 Score =  194 bits (474), Expect = 1e-49
 Identities = 85/117 (72%), Positives = 104/117 (88%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117


>BC065711-1|AAH65711.1|  117|Homo sapiens POLR2J protein protein.
          Length = 117

 Score =  194 bits (474), Expect = 1e-49
 Identities = 85/117 (72%), Positives = 104/117 (88%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117


>BC024165-1|AAH24165.1|  117|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide J, 13.3kDa protein.
          Length = 117

 Score =  194 bits (474), Expect = 1e-49
 Identities = 85/117 (72%), Positives = 104/117 (88%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKKEGLD 514
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+ AIK+K+EG++
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVAIKDKQEGIE 117


>AJ277932-1|CAC18368.1|  127|Homo sapiens RPB11a protein protein.
          Length = 127

 Score =  183 bits (445), Expect = 4e-46
 Identities = 85/127 (66%), Positives = 104/127 (81%), Gaps = 10/127 (7%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 60

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK----------EAIK 493
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+           AIK
Sbjct: 61  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRVRAGPGGADGVAIK 120

Query: 494 EKKEGLD 514
           +K+EG++
Sbjct: 121 DKQEGIE 127


>AJ277931-1|CAC18332.1|  115|Homo sapiens RPB11b1alpha protein
           protein.
          Length = 115

 Score =  175 bits (425), Expect = 1e-43
 Identities = 78/109 (71%), Positives = 94/109 (86%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+  +
Sbjct: 60  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108


>AJ277739-1|CAC18329.1|  115|Homo sapiens RPB11b1alpha protein
           protein.
          Length = 115

 Score =  175 bits (425), Expect = 1e-43
 Identities = 78/109 (71%), Positives = 94/109 (86%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 59

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+  +
Sbjct: 60  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108


>AJ277741-1|CAC18331.1|  115|Homo sapiens RPB11b2alpha protein
           protein.
          Length = 115

 Score =  174 bits (423), Expect = 2e-43
 Identities = 78/109 (71%), Positives = 94/109 (86%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+  +
Sbjct: 60  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108


>AC004084-4|AAP22342.1|  115|Homo sapiens unknown protein.
          Length = 115

 Score =  174 bits (423), Expect = 2e-43
 Identities = 78/109 (71%), Positives = 94/109 (86%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+  +
Sbjct: 60  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 108


>AF468111-1|AAL87672.1|  158|Homo sapiens DNA-directed RNA
           polymerase II subunit 11 protein.
          Length = 158

 Score =  173 bits (422), Expect = 3e-43
 Identities = 78/106 (73%), Positives = 93/106 (87%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 1   MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIKSQLLKDPQVLFAG 59

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 481
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+
Sbjct: 60  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 105


>BC105584-1|AAI05585.1|  138|Homo sapiens POLR2J4 protein protein.
          Length = 138

 Score =  173 bits (421), Expect = 4e-43
 Identities = 77/110 (70%), Positives = 94/110 (85%), Gaps = 1/110 (0%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL-LKDPKVLFA 340
           +NAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ Q  LKDP+VLFA
Sbjct: 22  VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQCDLKDPQVLFA 81

Query: 341 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
           GYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+  +
Sbjct: 82  GYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 131


>BC017341-1|AAH17341.2|  160|Homo sapiens MGC13098 protein protein.
          Length = 160

 Score =  173 bits (420), Expect = 5e-43
 Identities = 77/107 (71%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL-LKDPKVLFA 340
           +NAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ Q  LKDP+VLFA
Sbjct: 16  VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQCDLKDPQVLFA 75

Query: 341 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 481
           GYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+
Sbjct: 76  GYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 122


>BC017250-1|AAH17250.1|  179|Homo sapiens MGC13098 protein protein.
          Length = 179

 Score =  173 bits (420), Expect = 5e-43
 Identities = 77/107 (71%), Positives = 93/107 (86%), Gaps = 1/107 (0%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL-LKDPKVLFA 340
           +NAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ Q  LKDP+VLFA
Sbjct: 20  VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQCDLKDPQVLFA 79

Query: 341 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 481
           GYK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+
Sbjct: 80  GYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFR 126


>AB209398-1|BAD92635.1|  180|Homo sapiens MGC13098 protein variant
           protein.
          Length = 180

 Score =  172 bits (419), Expect = 6e-43
 Identities = 77/106 (72%), Positives = 92/106 (86%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+ QLLKDP+VLFAG
Sbjct: 23  MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIKSQLLKDPQVLFAG 81

Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFK 481
           YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL  ELSL EERF+
Sbjct: 82  YKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLIRELSLLEERFR 127


>BC062722-1|AAH62722.1|  130|Homo sapiens POLR2J4 protein protein.
          Length = 130

 Score =  171 bits (415), Expect = 2e-42
 Identities = 76/110 (69%), Positives = 93/110 (84%), Gaps = 1/110 (0%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQL-LKDPKVLFA 340
           +NAPP FESFLL++GEKK+   +DTKV NA +FT+NKEDHTLGN+I+ Q  LKDP+VLFA
Sbjct: 14  VNAPPAFESFLLFEGEKKITINKDTKVPNACLFTINKEDHTLGNIIKSQCDLKDPQVLFA 73

Query: 341 GYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAI 490
            YK+PHPLEHK ++R+QTT DY+PQEAF NAITDL SELSL EERF+  +
Sbjct: 74  SYKVPHPLEHKIIIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCL 123


>BC086857-1|AAH86857.1|  116|Homo sapiens DNA directed RNA
           polymerase II polypeptide J-related protein.
          Length = 116

 Score = 72.9 bits (171), Expect = 7e-13
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIR 304
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+
Sbjct: 1   MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIK 46


>AJ277740-1|CAC18330.1|  116|Homo sapiens RPB11b1beta protein
           protein.
          Length = 116

 Score = 72.9 bits (171), Expect = 7e-13
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIR 304
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+
Sbjct: 1   MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTINKEDHTLGNIIK 46


>AC004084-3|AAP22341.1|   76|Homo sapiens unknown protein.
          Length = 76

 Score = 72.1 bits (169), Expect = 1e-12
 Identities = 32/47 (68%), Positives = 40/47 (85%)
 Frame = +2

Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIR 304
           MNAPP FESFLL++GEK +   +DTKV NA +FT+NKEDHTLGN+I+
Sbjct: 1   MNAPPAFESFLLFEGEK-ITINKDTKVPNACLFTMNKEDHTLGNIIK 46


>BC000889-1|AAH00889.1|  133|Homo sapiens polymerase (RNA) I
           polypeptide D, 16kDa protein.
          Length = 133

 Score = 69.3 bits (162), Expect = 8e-12
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +2

Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
           F +++EDHTLGN +R+ ++K+P+V F GY   HP E K  LRIQT       E F   + 
Sbjct: 42  FVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLN 101

Query: 440 DLTSELSLFEERFKEAIKEKKE 505
           +L +      ++F+ +IK+ K+
Sbjct: 102 ELMNVCQHVLDKFEASIKDYKD 123


>AL136439-1|CAI16933.1|  133|Homo sapiens polymerase (RNA) I
           polypeptide D, 16kDa protein.
          Length = 133

 Score = 69.3 bits (162), Expect = 8e-12
 Identities = 31/82 (37%), Positives = 49/82 (59%)
 Frame = +2

Query: 260 FTVNKEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAIT 439
           F +++EDHTLGN +R+ ++K+P+V F GY   HP E K  LRIQT       E F   + 
Sbjct: 42  FVLHEEDHTLGNSLRYMIMKNPEVEFCGYTTTHPSESKINLRIQTRGTLPAVEPFQRGLN 101

Query: 440 DLTSELSLFEERFKEAIKEKKE 505
           +L +      ++F+ +IK+ K+
Sbjct: 102 ELMNVCQHVLDKFEASIKDYKD 123


>AL355001-1|CAI16178.1|  493|Homo sapiens zinc finger, MYM-type 5
           protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 199 QQERFECRRCIHDYKFVIKFFGLKILQRNPNKAIFSFFYQTNSSQINFKLNNLFIK 32
           QQ+RF C+ CI++YK +++    K+      K   + F + N  Q+    N L  K
Sbjct: 226 QQKRFCCQSCINEYKQMMETKSKKLTASENRKR--NAFREENEKQLYGSSNTLLKK 279


>AL354808-2|CAI41001.1|  493|Homo sapiens zinc finger, MYM-type 5
           protein.
          Length = 493

 Score = 29.5 bits (63), Expect = 8.4
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 199 QQERFECRRCIHDYKFVIKFFGLKILQRNPNKAIFSFFYQTNSSQINFKLNNLFIK 32
           QQ+RF C+ CI++YK +++    K+      K   + F + N  Q+    N L  K
Sbjct: 226 QQKRFCCQSCINEYKQMMETKSKKLTASENRKR--NAFREENEKQLYGSSNTLLKK 279


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,864,881
Number of Sequences: 237096
Number of extensions: 1166305
Number of successful extensions: 2095
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2082
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5590411794
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)