Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8d23
(557 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81135-2|CAB03455.1| 122|Caenorhabditis elegans Hypothetical pr... 154 5e-38
Z22179-12|CAA80165.1| 144|Caenorhabditis elegans Hypothetical p... 62 3e-10
AF043694-3|AAC24285.3| 220|Caenorhabditis elegans Hypothetical ... 28 4.0
U41109-8|AAB37044.1| 344|Caenorhabditis elegans Hypothetical pr... 28 5.2
AL021479-2|CAA16323.1| 298|Caenorhabditis elegans Hypothetical ... 27 6.9
AF025471-7|AAB71066.3| 161|Caenorhabditis elegans Hypothetical ... 27 6.9
X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic int... 27 9.1
U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate fi... 27 9.1
U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate fi... 27 9.1
U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation... 27 9.1
AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determini... 27 9.1
AF024498-2|AAF39804.2| 318|Caenorhabditis elegans Serpentine re... 27 9.1
AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine re... 27 9.1
>Z81135-2|CAB03455.1| 122|Caenorhabditis elegans Hypothetical
protein W01G7.3 protein.
Length = 122
Score = 154 bits (373), Expect = 5e-38
Identities = 76/111 (68%), Positives = 87/111 (78%)
Frame = +2
Query: 164 MNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLGNMIRHQLLKDPKVLFAG 343
MNAP FESFLL D +KK E+DTKV NAAIFT+ KEDHTLGNM++ QLLKDP+VLFAG
Sbjct: 1 MNAPAAFESFLLLD-DKKFYIEKDTKVPNAAIFTIMKEDHTLGNMLKIQLLKDPEVLFAG 59
Query: 344 YKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTSELSLFEERFKEAIKE 496
YK PHPLEHK +LRIQTT++ TP +A AITDL ELSL E R AIK+
Sbjct: 60 YKNPHPLEHKILLRIQTTNNTTPADALTTAITDLVGELSLLEHRIDAAIKK 110
>Z22179-12|CAA80165.1| 144|Caenorhabditis elegans Hypothetical
protein F58A4.9 protein.
Length = 144
Score = 62.1 bits (144), Expect = 3e-10
Identities = 27/77 (35%), Positives = 42/77 (54%)
Frame = +2
Query: 272 KEDHTLGNMIRHQLLKDPKVLFAGYKIPHPLEHKFVLRIQTTSDYTPQEAFMNAITDLTS 451
+EDHT+GN I+H L + +V F GY +PHPLE K + R+QT E A +
Sbjct: 67 EEDHTIGNSIKHILSRMDEVEFCGYNVPHPLEDKILFRVQTKDGINALEVLAKAFESVEQ 126
Query: 452 ELSLFEERFKEAIKEKK 502
S +F+E+ ++ +
Sbjct: 127 IFSTIRGKFEESYEQSQ 143
>AF043694-3|AAC24285.3| 220|Caenorhabditis elegans Hypothetical
protein C45E1.4 protein.
Length = 220
Score = 28.3 bits (60), Expect = 4.0
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +2
Query: 137 KKFDNEFVVMNAPPTFESFLLYDGEKKVQK---EEDTKVT----NAAIFTVNKEDHTL 289
+K + + PP F+ FL D +KVQK E D N I V+ DH+L
Sbjct: 84 RKIERMLKNLRPPPVFDEFLTEDETEKVQKAHSERDVDSVLMNRNLVIVVVHSLDHSL 141
>U41109-8|AAB37044.1| 344|Caenorhabditis elegans Hypothetical
protein F52E1.8 protein.
Length = 344
Score = 27.9 bits (59), Expect = 5.2
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = -2
Query: 391 LNSEYKFMFQWMRYLVTGKE--DFWVLQQL 308
+N+EY MF W++ +TG E DFW + L
Sbjct: 145 INNEYGQMFNWLQN-ITGMESIDFWNINDL 173
>AL021479-2|CAA16323.1| 298|Caenorhabditis elegans Hypothetical
protein Y22F5A.4 protein.
Length = 298
Score = 27.5 bits (58), Expect = 6.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 158 VVMNAPPTFESFLLYDGEKKVQKEEDTKVTNAAIFTVNKEDHTLG 292
V P TF+ F + KK ++ +V + TVN++ + +G
Sbjct: 221 VTGETPATFDDFRAFGSFKKASVKQFAQVESVCSLTVNRDVYVVG 265
>AF025471-7|AAB71066.3| 161|Caenorhabditis elegans Hypothetical
protein R52.9 protein.
Length = 161
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 348 RYRIHWNINLYSEFKQHQTIHHRK 419
RY I WN+N Y+ FK + + H K
Sbjct: 31 RYNIPWNLNRYNFFKGNFQMSHCK 54
>X70830-1|CAA50178.1| 534|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 534
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 398 SDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKK 502
SD + NAI D SE+ + RFK+ E+K
Sbjct: 148 SDREKISQWTNAIADAQSEVEMLRARFKQLTDEEK 182
>U49831-7|AAA93408.1| 558|Caenorhabditis elegans Intermediate
filament, b protein1, isoform a protein.
Length = 558
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 398 SDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKK 502
SD + NAI D SE+ + RFK+ E+K
Sbjct: 148 SDREKISQWTNAIADAQSEVEMLRARFKQLTDEEK 182
>U49831-6|AAA93407.1| 589|Caenorhabditis elegans Intermediate
filament, b protein1, isoform b protein.
Length = 589
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 398 SDYTPQEAFMNAITDLTSELSLFEERFKEAIKEKK 502
SD + NAI D SE+ + RFK+ E+K
Sbjct: 179 SDREKISQWTNAIADAQSEVEMLRARFKQLTDEEK 213
>U23484-8|AAC46765.1| 1200|Caenorhabditis elegans Masculinisation of
germline protein5 protein.
Length = 1200
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 86 EETKNRFIRISL*YF*SKKFDNEFVVMNAPPTFESFLLYDGEKKVQKEEDTK 241
EE K R +++ +K DNE +M E Y+ EK++QKE D+K
Sbjct: 104 EEIKARLPALAMANTAKEKEDNEDDLMAQLEKMEG--RYESEKRLQKESDSK 153
>AF286899-1|AAG01332.1| 1200|Caenorhabditis elegans sex determining
protein MOG-5 protein.
Length = 1200
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = +2
Query: 86 EETKNRFIRISL*YF*SKKFDNEFVVMNAPPTFESFLLYDGEKKVQKEEDTK 241
EE K R +++ +K DNE +M E Y+ EK++QKE D+K
Sbjct: 104 EEIKARLPALAMANTAKEKEDNEDDLMAQLEKMEG--RYESEKRLQKESDSK 153
>AF024498-2|AAF39804.2| 318|Caenorhabditis elegans Serpentine
receptor, class x protein101 protein.
Length = 318
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = -2
Query: 172 CIHDYKFVIKFFGLKILQRNPNKAIFSFFYQTNSSQINFKLNNLFIKSYNRVTYIK 5
CI D+ F I + + AIF+FF S+ + L+ + + +N + IK
Sbjct: 240 CIQDWLFAIDSINSTFVDLISDDAIFTFFCDIFSNMMTPVLDGIVMLIFNHESKIK 295
>AF016435-4|AAB65880.2| 330|Caenorhabditis elegans Serpentine
receptor, class w protein8 protein.
Length = 330
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +3
Query: 33 FINKLFNLKFIWDEFV**KKLKIALFGFLCNIFSPKNLITNL 158
F ++ + + D +V KL + +FGF+C + LI L
Sbjct: 275 FSETIYGVFYFLDYYVYYDKLNVPIFGFICADIDARELIHTL 316
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,005,013
Number of Sequences: 27780
Number of extensions: 206308
Number of successful extensions: 442
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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