Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8d21
(422 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces po... 156 2e-39
SPAC732.01 |vma11||V-type ATPase proteolipid subunit|Schizosacch... 145 3e-36
SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces... 66 2e-12
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 27 0.91
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 1.2
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 27 1.6
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.6
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce... 26 2.1
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 3.7
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 4.8
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 25 4.8
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 25 6.4
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas... 24 8.5
>SPAC1B3.14 |vma3||V-type ATPase subunit c|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 161
Score = 156 bits (378), Expect = 2e-39
Identities = 75/108 (69%), Positives = 93/108 (86%)
Frame = +1
Query: 97 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 276
P+Y PFFGVMG +AI+F++ GAAYGTAK+G GI+AM V+RP+LI+K+ IPVVMAGIIAI
Sbjct: 7 PVYAPFFGVMGCTAAIVFASFGAAYGTAKAGVGISAMGVLRPDLIVKNTIPVVMAGIIAI 66
Query: 277 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIV 420
YGLVV+VLI+G L++ + LY GFI LGAGL+VG +GLAAGFAIGIV
Sbjct: 67 YGLVVSVLISGNLKQILS--LYSGFIQLGAGLSVGLAGLAAGFAIGIV 112
>SPAC732.01 |vma11||V-type ATPase proteolipid
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 162
Score = 145 bits (351), Expect = 3e-36
Identities = 65/108 (60%), Positives = 85/108 (78%)
Frame = +1
Query: 97 PIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAI 276
PIY FFG G ++++FS LGA YGTA +G GIAA+ RPE++MKS+IPVVM+GII +
Sbjct: 7 PIYSSFFGFAGVCASMVFSCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGV 66
Query: 277 YGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAIGIV 420
YGLV++VLIAG + +Y L+ GFIHL AGLAVG +G+AAG+AIG+V
Sbjct: 67 YGLVMSVLIAGDMSPDNDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVV 114
>SPAC2C4.13 |vma16||V-type ATPase subunit c''|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 199
Score = 66.5 bits (155), Expect = 2e-12
Identities = 33/107 (30%), Positives = 57/107 (53%), Gaps = 6/107 (5%)
Frame = +1
Query: 115 FGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVA 294
+G++G AS + F +GAA+G GT I +V P + K++I ++ ++AIY L++A
Sbjct: 45 WGLLGIASCVAFGIIGAAWGIFICGTSILGGAVKAPRIKTKNLISIIFCEVVAIYSLIIA 104
Query: 295 VLIAGALQE--PANY----PLYKGFIHLGAGLAVGFSGLAAGFAIGI 417
++ + + + PA + Y GF G+ VG L G +GI
Sbjct: 105 IVFSAKINDINPAGFYTKSHYYTGFALFWGGITVGLCNLICGVCVGI 151
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 27.5 bits (58), Expect = 0.91
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = +1
Query: 100 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIY 279
+YGPF+ A+ FS Y +G G + S+ K +I A II Y
Sbjct: 87 LYGPFWITTTVIQALFFSNSITEYARYATGHGTSGYSI-------KKLISA--ASIIYGY 137
Query: 280 GLVVAVLIAGAL 315
++AVL+ G L
Sbjct: 138 TTIIAVLLWGIL 149
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 27.1 bits (57), Expect = 1.2
Identities = 21/95 (22%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Frame = +1
Query: 76 NKMAENNP---IYGPFFG-VMGAASAIIFSALGAAYGTAKSGTGIAAMSVMR-PELIMKS 240
+K+A ++P I F+G ++G + F+ + + ++ G S LI+ S
Sbjct: 1424 DKIAMDSPRARITTMFYGEILGPLGTLFFTCIPFLFINSQPGNDDETQSTNAFIRLIIMS 1483
Query: 241 IIPVVMAGIIAIYGLVVAVLIAGALQEPA-NYPLY 342
+ P+V++ IIA + + +++ L + + Y +Y
Sbjct: 1484 VAPLVLSAIIAFFFFCLGIMLRPILGDRSKTYGVY 1518
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/57 (29%), Positives = 26/57 (45%)
Frame = +1
Query: 241 IIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLAAGFAI 411
II +AG+IA + +++ IAG + G ++ G L LA GF I
Sbjct: 193 IITATIAGVIAAFSVIITATIAGVIAAMV------GILYFGHWLVYKILILAFGFKI 243
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 1.6
Identities = 22/55 (40%), Positives = 26/55 (47%)
Frame = -1
Query: 422 PTMPMAKPAARPENPTAKPAPKWMNPL*RG*LAGSWRAPAIRTATTRP*MAIIPA 258
P++PM PAA P P+A AP PL AG AP + A P A PA
Sbjct: 437 PSLPMGAPAAPPLPPSAPIAP----PL----PAGMPAAPPLPPAAPAPPPAPAPA 483
>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 2.1
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -3
Query: 354 DEPFVKGVVGWLLEGTSNQDSHDQTVDGNNTRHDDRND 241
DEPF+K +L+ SN++S+ VD N+ D +D
Sbjct: 48 DEPFLKSKYMDILQKISNRESNVINVDLNDLYEFDPSD 85
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 25.4 bits (53), Expect = 3.7
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 55 TGPKNCDDYLHTL 17
TGP N DDY+H +
Sbjct: 369 TGPSNTDDYIHRI 381
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 4.8
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 421 PRCLWRNRQPDQRILQPNQ 365
PRCLW +Q +++PN+
Sbjct: 582 PRCLWTGKQVFTVLMKPNR 600
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 25.0 bits (52), Expect = 4.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = -2
Query: 55 TGPKNCDDYLHTLTP 11
TG KNCDD+L +P
Sbjct: 402 TGNKNCDDHLRDKSP 416
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 24.6 bits (51), Expect = 6.4
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 154 ALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGAL 315
AL +G + + + P+L+ I V+ G+I + GL + + +GA+
Sbjct: 354 ALVEYFGNIDATARLGVIISKEPKLLGLYIFIGVLLGLIGVIGLFICLHFSGAM 407
>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 24.2 bits (50), Expect = 8.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Frame = +1
Query: 19 VCADSHHSFWDL*ILPHLTNKMAENNPIY-GPFF--GVMGAASAIIFSALGAAY 171
VC D H F+DL L + ++ N I+ G F G + +F L A Y
Sbjct: 48 VCGDIHGQFYDLLELFRVGGELPSTNYIFMGDFVDRGYFSLETFTLFMLLKARY 101
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,947,844
Number of Sequences: 5004
Number of extensions: 39326
Number of successful extensions: 128
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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