Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d15
         (448 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical ...    30   0.67 
Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical p...    28   2.7  
U88170-8|AAB42244.1|  345|Caenorhabditis elegans Serpentine rece...    28   3.6  
Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical p...    27   6.2  
AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical ...    27   6.2  
AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical ...    27   6.2  
Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL132859-6|CAB60493.3|  324|Caenorhabditis elegans Hypothetical
           protein Y39C12A.7 protein.
          Length = 324

 Score = 30.3 bits (65), Expect = 0.67
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 128 FAKMRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHD 241
           F    K I  +   T+  IF+L+C Y++ K   +  H+
Sbjct: 224 FTASEKNIFLLSFDTIYTIFILVCPYLHYKNNTTWQHE 261


>Z68302-1|CAA92634.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.3 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +2

Query: 92  ETARQKRERKQEFAK-MRKQIHTIVLPTVVVIFLLICVYVYIKTRPSTMHDA*Q*LYYVN 268
           ET  ++  + +E A+ MR +I T+  P++     +  VY  +K     +  A   +  + 
Sbjct: 147 ETTEKRSSKVKEMARFMRSKITTVHTPSIFSCIRMYSVYSIVKMLYLIIAIAQFVILAIF 206

Query: 269 RIYILDLFWGW 301
                D+FWGW
Sbjct: 207 LDQEKDMFWGW 217


>Z68114-10|CAA92157.2|  322|Caenorhabditis elegans Hypothetical
           protein F17A2.13 protein.
          Length = 322

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 355 STKSLTCYHIESQSQLEKPPPE*VKNVYSIYIIKLLLCVVHRR 227
           S++S  C    S S+ EKP PE    V  +Y  KL    VH +
Sbjct: 185 SSESSHCSASSSLSKTEKPEPENSNFVNELYYCKLARSQVHHK 227


>U88170-8|AAB42244.1|  345|Caenorhabditis elegans Serpentine
           receptor, class h protein49 protein.
          Length = 345

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 19/76 (25%), Positives = 37/76 (48%)
 Frame = +2

Query: 11  CKTYIHILFIFADLLALKMRKLKGPVKETARQKRERKQEFAKMRKQIHTIVLPTVVVIFL 190
           C   I ++F  +  L + +RK++     + R K+ +K  F     Q+ + +L  VV +FL
Sbjct: 221 CLIPIQVIFFISHSL-MYLRKIQNINTFSKRTKKLQKSFFRAGIAQVTSPILVIVVPLFL 279

Query: 191 LICVYVYIKTRPSTMH 238
           L  + +  +  P  M+
Sbjct: 280 LTYILITKQYLPGAMN 295


>Z92967-2|CAB07478.1| 1101|Caenorhabditis elegans Hypothetical protein
            T25E12.4a protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 170  LVTQSYEFVFAFSRILVFFP 111
            LVT  ++F F FS  ++FFP
Sbjct: 1068 LVTYPFKFYFVFSCFIIFFP 1087


>Z82052-10|CAB04830.1| 1101|Caenorhabditis elegans Hypothetical
            protein T25E12.4a protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 170  LVTQSYEFVFAFSRILVFFP 111
            LVT  ++F F FS  ++FFP
Sbjct: 1068 LVTYPFKFYFVFSCFIIFFP 1087


>AL021572-4|CAA16519.1| 1101|Caenorhabditis elegans Hypothetical
            protein T25E12.4a protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 170  LVTQSYEFVFAFSRILVFFP 111
            LVT  ++F F FS  ++FFP
Sbjct: 1068 LVTYPFKFYFVFSCFIIFFP 1087


>AL021507-1|CAA16430.1| 1101|Caenorhabditis elegans Hypothetical
            protein T25E12.4a protein.
          Length = 1101

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 170  LVTQSYEFVFAFSRILVFFP 111
            LVT  ++F F FS  ++FFP
Sbjct: 1068 LVTYPFKFYFVFSCFIIFFP 1087


>Z81533-5|CAB04337.1|  342|Caenorhabditis elegans Hypothetical
           protein F36G9.8 protein.
          Length = 342

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
 Frame = +2

Query: 38  IFADLLALKMRKLKGPVKETARQK-----RERKQEFAKMRKQIHTIVLPTVVVIFLLICV 202
           IF   L L M KL  P ++TAR +      + +   A     I  +V+ T+ VIFL +CV
Sbjct: 147 IFLITLMLLMFKLAIPDQKTARAQFIELYPDLQYLVASKHVFIVCVVVETIHVIFLCLCV 206

Query: 203 Y 205
           +
Sbjct: 207 F 207


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,247,976
Number of Sequences: 27780
Number of extensions: 207254
Number of successful extensions: 670
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 777938954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)