Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8d13
(532 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 129 3e-31
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 33 0.027
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 30 0.25
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 4.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 5.3
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar... 25 7.0
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe... 25 7.0
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 9.3
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 25 9.3
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 129 bits (311), Expect = 3e-31
Identities = 63/131 (48%), Positives = 84/131 (64%), Gaps = 5/131 (3%)
Frame = +3
Query: 153 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 332
+ +A K TLP LPY YNALEP +S IM LHH KHH TY+NNLN A+EKLA
Sbjct: 16 VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74
Query: 333 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNL 497
D++ + L A+KFNGGGHINHS+FW L+P GGKP S L KA+ +GS ++
Sbjct: 75 -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133
Query: 498 KNQLSTASVAV 530
+ +++ A ++
Sbjct: 134 QKEMNAALASI 144
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 33.1 bits (72), Expect = 0.027
Identities = 32/110 (29%), Positives = 47/110 (42%)
Frame = +3
Query: 174 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 353
RQKHT P P +A S HH HH+ N L EK K + ++
Sbjct: 97 RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142
Query: 354 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKN 503
+ +P+ F G IN+ I N S + P + + + K S+ +LKN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.9 bits (64), Expect = 0.25
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 264 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 437
K+HA K+ QA K D +N+A + ++N N+ +FW +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -3
Query: 362 CKVDNGVDITFSLCLCEFLFSNV 294
C VD+ +I+ SLC EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 5.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 284 DISRVMFAVMKTHDFTANDRLQCIVLVRK 198
D V+F+ KT ANDRLQCI+ ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162
>SPAC30C2.05 |erv14||cornichon family protein
Erv14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 25.0 bits (52), Expect = 7.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -3
Query: 422 QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFSLCL 318
QV+ K ++D T G K DN + +TF L +
Sbjct: 91 QVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIM 125
>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 438 KPSDVLTKAVEKDFGSWDNLK 500
KPSD+ T+ V DF +D K
Sbjct: 16 KPSDLTTEVVGPDFNKYDERK 36
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 24.6 bits (51), Expect = 9.3
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 13/122 (10%)
Frame = +3
Query: 183 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 356
HT+P L + N L P+ S E + + +H + LN V +L + I
Sbjct: 39 HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96
Query: 357 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNLKN 503
L A +F + NH F + + + + KAV ++FGS +NL +
Sbjct: 97 LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
Query: 504 QL 509
++
Sbjct: 157 KI 158
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 24.6 bits (51), Expect = 9.3
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Frame = +2
Query: 122 HVNVTKDWI-IDSSCR-CFSPEAYFARASVRVQCTGA-GH*P*NHESSSQQTSRD 277
H N K W+ ++ +C C +P ++ A GH P NH + S T+ D
Sbjct: 419 HENCIKPWLRVNGTCAICRAPVDPNSQQRNNTSTDSANGHNPSNHANPSTSTTND 473
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,502
Number of Sequences: 5004
Number of extensions: 40914
Number of successful extensions: 106
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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