Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d13
         (532 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161...    95   2e-20
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225...    63   2e-10
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86...    57   1e-08
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046...    30   1.3  
06_01_0286 - 2094920-2097805                                           29   1.8  
03_05_0435 - 24259864-24260206,24260302-24260467,24261175-242612...    27   9.4  

>05_03_0512 +
           14913356-14913769,14915907-14916032,14916129-14916185,
           14916950-14917027,14917681-14917773
          Length = 255

 Score = 95.5 bits (227), Expect = 2e-20
 Identities = 47/81 (58%), Positives = 56/81 (69%), Gaps = 2/81 (2%)
 Frame = +3

Query: 153 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQ 326
           +  A A+R   T  LP+LPY+Y ALEP IS EIM LHH KHHATY+ N N A E+L  A 
Sbjct: 19  LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78

Query: 327 AKGDIDTIINLAPALKFNGGG 389
           AKGD   I++L  A+KFNGGG
Sbjct: 79  AKGDAPAIVHLQSAIKFNGGG 99


>06_01_0314 +
           2255908-2255979,2256354-2256512,2257021-2257209,
           2257390-2257561,2257711-2257784,2257818-2257904,
           2257975-2257998,2258100-2258225
          Length = 300

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 36/119 (30%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
 Frame = +3

Query: 198 LPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA---- 362
           L +  +ALEP IS+  + LH  KH   Y+++LN   ++LA +   G  ++ +I  A    
Sbjct: 73  LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129

Query: 363 -PALKFNGGGHI-NHSIFWHNLSP-NGGKPSDVLTKAVEKDFGSWDNLKNQLSTASVAV 530
            P  ++N    + NH  FW ++ P  GG P   + + +EKDFGS+ N + +   +++++
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSL 188


>06_01_0109 -
           863806-864045,864448-864566,864680-864851,864914-865108,
           865179-865388,865738-865926
          Length = 374

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 7/115 (6%)
 Frame = +3

Query: 198 LPYEYNALEPVISREIMSLHHSKHHATYINNLN-----VAEEKLAQAQAKGDIDTIINLA 362
           LPY  +ALEP IS+E +  H   H   ++  LN        E ++  Q           A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188

Query: 363 PALKFNGGGHI-NHSIFWHNLSP-NGGKPSDVLTKAVEKDFGSWDNLKNQLSTAS 521
           P   F     I NH  +W ++ P  GGKP + L K + +DFGS+D +  Q   A+
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAA 243


>01_06_0405 +
           29103723-29103839,29103928-29104012,29104572-29104674,
           29104798-29104882,29105414-29105497,29105627-29105730,
           29106522-29106783,29106978-29107414,29107637-29107718,
           29109913-29110089,29110640-29110732,29110812-29110877,
           29110992-29111038,29111165-29111430,29111443-29111845,
           29111992-29112376
          Length = 931

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 362 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 228
           C VD  V + +    CEF    V + DISR++F   K  +F  ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151


>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 186 TLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 353
           +L  L   +N L  +I   + SLH   H     NNL+    + +Q Q  GD D  I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862


>03_05_0435 -
           24259864-24260206,24260302-24260467,24261175-24261241,
           24261553-24261648,24261718-24261898,24262252-24262323,
           24262393-24262505,24262596-24262817,24263262-24263910,
           24264118-24264206,24265932-24266015,24266219-24266358,
           24266522-24266573
          Length = 757

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 25/98 (25%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
 Frame = +2

Query: 14  NLQFSRCIISSFLIP*STFSKF*S*PVSFLLNFFSHHVNVTKDWII--DSSCRCFSPEAY 187
           NL  S C      IP   +SK    PV  L N   H V +T++ +    S     +   Y
Sbjct: 369 NLGASTCATRHRSIPDDNYSKLVGSPVCALPNVDLHLVRMTEEMLAPNTSEMNTHNQGDY 428

Query: 188 FARASVRVQCTGAGH*P*NHESSSQQTSRDLYQQSKRC 301
            ++A++      +G    N +   Q+   D     KRC
Sbjct: 429 SSQATMPTSAGNSGQ--ENPKRKRQKCQNDNVDSCKRC 464


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,682,152
Number of Sequences: 37544
Number of extensions: 279433
Number of successful extensions: 712
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)