Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d11
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical pr...    27   7.2  
AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical ...    27   7.2  
AL110490-5|CAB54441.1|  424|Caenorhabditis elegans Hypothetical ...    27   9.5  

>Z81147-5|CAB03534.1|  663|Caenorhabditis elegans Hypothetical
           protein T09E11.7 protein.
          Length = 663

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 140 ESKFYLTIKAVLNIQQVSGANTQRAYYTSVVLFKQLY 250
           E +FYL +  V  I  V   N Q  YY ++ L   +Y
Sbjct: 147 EVQFYLIVPVVFMIGDVLSGNKQLGYYYALCLSSLIY 183


>AL023816-1|CAA19430.2|  250|Caenorhabditis elegans Hypothetical
           protein T05G11.2 protein.
          Length = 250

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
 Frame = +1

Query: 223 KCSAF*TTLFACLY---LTSGSACTRVFLSRIFSVLFYFIVENF 345
           +CS+F   + +C Y   LT     TR+ L   F +LF+ ++ ++
Sbjct: 156 QCSSFFCAINSCYYYYWLTYEEVATRIALLDFFIILFFNVIPSY 199


>AL110490-5|CAB54441.1|  424|Caenorhabditis elegans Hypothetical
           protein Y48B6A.5 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 390 YKLFFAPFDQQ*NRRSIVLYWTPYGIV 470
           YK+   P   +    SI+ YWT YGI+
Sbjct: 109 YKVLMNPKSSKEGYHSILFYWTLYGIL 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,973,989
Number of Sequences: 27780
Number of extensions: 241942
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)