Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d11
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   1.6  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.1  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   6.5  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   6.5  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   6.5  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 113 EFDFIGPRFESKFYLTIKAVLNIQQVSGANTQRAYYTSVVLFKQL 247
           E +F+GP+  +  +    A  +   VSGA  +R  + +  LF  L
Sbjct: 110 EDEFMGPKCAAFLFQLSFATTSTTIVSGAMAERCNFKAYCLFSFL 154


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = +3

Query: 441 VLYWTPYGIVN 473
           VL WTPYG+++
Sbjct: 284 VLSWTPYGVMS 294


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 90  RSHRANKLQPKVLLKIFQIENV*NYVNN 7
           R+ R    +PK++  +    N  NY NN
Sbjct: 70  RTERERSKEPKIISSLSNNYNYSNYNNN 97


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 90  RSHRANKLQPKVLLKIFQIENV*NYVNN 7
           R+ R    +PK++  +    N  NY NN
Sbjct: 70  RTERERSKEPKIISSLSNNYNYSNYNNN 97


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 90  RSHRANKLQPKVLLKIFQIENV*NYVNN 7
           R+ R    +PK++  +    N  NY NN
Sbjct: 70  RTERERSKEPKIISSLSNNYNYSNYNNN 97


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 90  RSHRANKLQPKVLLKIFQIENV*NYVNN 7
           R+ R    +PK++  +    N  NY NN
Sbjct: 70  RTERERSKEPKIISSLSNNYNYSNYNNN 97


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 90  RSHRANKLQPKVLLKIFQIENV*NYVNN 7
           R+ R    +PK++  +    N  NY NN
Sbjct: 70  RTERERSKEPKIISSLSNNYNYSNYNNN 97


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 90  RSHRANKLQPKVLLKIFQIENV*NYVNN 7
           R+ R    +PK++  +    N  NY NN
Sbjct: 70  RTERERSKEPKIISSLSNNYNYSNYNNN 97


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -2

Query: 268 SNTDRQIKLFKKHYTCIISPLCICTRHLLNIE 173
           +N++ Q+K F     C+   L     + LN+E
Sbjct: 43  ANSEEQMKKFGCFEACVFQKLHFMDGNTLNVE 74


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,956
Number of Sequences: 438
Number of extensions: 2925
Number of successful extensions: 15
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)