Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d10
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190...    28   5.6  
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722...    27   9.8  

>05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,
            1902740-1902821,1902928-1903054,1903369-1903686,
            1903785-1903846,1903988-1904074,1904139-1904195,
            1906113-1906197,1906916-1907185,1908158-1908254,
            1908390-1908436,1908826-1908939,1909024-1909117,
            1909360-1909457,1910356-1910455,1911445-1911521,
            1911824-1913122
          Length = 1110

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +3

Query: 477  WWLNGA*KITLIFCRSMWSTRANFHYDNIKVAGKYQLLLNSN*GRCGCNTS 629
            WW N   K  L    ++W  + N   D +K  G + +++  N   C   T+
Sbjct: 1014 WWSNTEQKGQLRQINTIWKLKINVLEDLVKEFGGFDIIIGGNFSSCKGGTT 1064


>03_06_0090 +
           31570588-31570710,31570962-31571080,31572215-31572284,
           31572544-31573492,31574789-31575699
          Length = 723

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = -2

Query: 132 LVEANVYILFCNTGLP---LLTETKRKFSKNKIPLLHYGNKTHLLL 4
           LV +  +  FC TGLP   ++      F  +K PL+    K H L+
Sbjct: 73  LVRSTTFKTFCTTGLPSDVVIEVGDMTFHLHKFPLMSRSKKLHDLI 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,708,845
Number of Sequences: 37544
Number of extensions: 293476
Number of successful extensions: 499
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)