Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d10
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical pr...    31   0.71 
AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical ...    29   2.2  
U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine re...    28   6.6  
U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z81088-8|CAB03130.2|  332|Caenorhabditis elegans Hypothetical
           protein F53F1.8 protein.
          Length = 332

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = -3

Query: 365 LYLFPIL*FWLQFTVVILIIMIPCEHHIVYLLGTQTFI*FLLTSF-GWFFGLQFVGLAI 192
           LY FP+  F L+   ++ ++++     ++Y +  Q    +  T+F G F+ L FVG+ +
Sbjct: 5   LYDFPLWFFVLEGITLLALLLLTIVSFLLYFIEIQIIFAYRKTTFRGPFYRLMFVGIIV 63


>AC026301-5|AAK68894.1|  745|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.3 protein.
          Length = 745

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -3

Query: 590 QKLVFTCNLYIIVVEICSSRPH*SAEYQCN 501
           QKL+F+C   +I++EI  + PH    Y  N
Sbjct: 3   QKLIFSCLFLVILLEIVKAHPHPIGFYSKN 32


>U97191-3|AAB52430.2|  133|Caenorhabditis elegans Hypothetical
           protein F53F10.3 protein.
          Length = 133

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 291 TPYCLFVRNPNIYIISVDFIWMVLWVA-VCRIGNLR 187
           T YCL +   N Y+ SV+F  M   +A +CRI + R
Sbjct: 82  TRYCLVITPINYYLSSVNFFVMCTGLAQLCRIAHYR 117


>AC006607-4|AAK68171.1|  309|Caenorhabditis elegans Serpentine
           receptor, class xa protein5 protein.
          Length = 309

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -3

Query: 362 YLFPIL*FWLQFTVVILIIMIPCEHHIVY 276
           YL P+   WL     +LI++ P ++HI++
Sbjct: 96  YLVPLCLNWLMTAHRVLILVFPAKNHIIF 124


>U23510-3|AAC46782.1|  340|Caenorhabditis elegans Hypothetical
           protein R12C12.3 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 288 PYCLFVRNPNIYIISVDFIWMVLWVAVCRIGNLRILLYNVN 166
           P C+  ++ ++Y++ +  I +  W+AVCR    ++L  N N
Sbjct: 95  PLCMMTKSCSLYLMVL--ITIERWIAVCRPLQAKVLCTNRN 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,604,130
Number of Sequences: 27780
Number of extensions: 301562
Number of successful extensions: 650
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)