Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d09
         (606 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    29   0.70 
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|...    25   6.5  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 28.7 bits (61), Expect = 0.70
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -2

Query: 272 T*MTISKIIYVCILLDNSLNSH*ITTKTSLSEKKYDLQSSECHHLN 135
           T +++ K++ +CI +D  LN+H IT +  L EKK       CH  N
Sbjct: 559 TTVSVDKVV-ICIPMDK-LNTHLITFEPPLEEKKLK-AIDRCHFTN 601


>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
           5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 151 SELCRSYFFSDRLVFVVI*CEFSELSSRIQT 243
           S+ C  + FSD+ V     C+F+++S    T
Sbjct: 398 SQQCTKFLFSDQKVITPSFCKFAQVSDMCST 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,994
Number of Sequences: 5004
Number of extensions: 35208
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)