Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d09
         (606 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_811| Best HMM Match : DUF1011 (HMM E-Value=3.6e-25)                 28   5.1  
SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09)                 28   6.7  
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)                 28   6.7  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  
SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   6.7  

>SB_811| Best HMM Match : DUF1011 (HMM E-Value=3.6e-25)
          Length = 419

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/41 (31%), Positives = 25/41 (60%)
 Frame = -2

Query: 260 ISKIIYVCILLDNSLNSH*ITTKTSLSEKKYDLQSSECHHL 138
           +S ++  C L   +LN+  +T K  + E++YD+ +S+ H L
Sbjct: 193 LSAMMAGCGLAFLALNTLQVTKKQQVKEREYDVTTSDMHEL 233


>SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09)
          Length = 557

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -3

Query: 208 IKSQQKQVCRKKNTTYKVPNVI 143
           +K +  + CRKK TT+K+P+ +
Sbjct: 57  VKEESFRFCRKKRTTFKMPDKV 78


>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
          Length = 291

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +3

Query: 522 SPLKTYLYTPTYNATQ--PTL 578
           SP + YLYTP Y+ TQ  PTL
Sbjct: 168 SPAQQYLYTPMYSPTQSAPTL 188


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +1

Query: 496 TSSAPYWTPRRSKPIYTRRHTTPRNLRSEVTKRHYRR 606
           +S+ PY TP+ + P    R  TP N R     R   R
Sbjct: 819 SSAGPYRTPKHAAPPVPPRRATPENERPPADPRFTNR 855


>SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 834

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +2

Query: 2   SQCIYVVEILCFSLFYVTLSPIYSDAIV*HNFVCSIK 112
           S C+ VV +LCF++F  + SP+  + I  H+   S K
Sbjct: 696 STCLMVV-VLCFAVFVGSWSPLSRNGITLHSHAVSDK 731


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,427,985
Number of Sequences: 59808
Number of extensions: 245720
Number of successful extensions: 525
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 524
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)