Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d09
         (606 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1907|AAM68555.1|  440|Drosophila melanogaster CG30076-P...    29   6.5  
AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containi...    28   8.6  
AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA...    28   8.6  

>AE013599-1907|AAM68555.1|  440|Drosophila melanogaster CG30076-PA
           protein.
          Length = 440

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 408 PSTHAMTKLFRPLKRRLQTRCPVKLSHYLHRKFRL*TLE 292
           PS   + KL RP+ +   T   V +SH +H+  R+  LE
Sbjct: 74  PSPKKVIKLRRPIPKPTITESSVMISHGIHKDHRMRQLE 112


>AF517634-1|AAM77747.1| 4876|Drosophila melanogaster BIR-containing
            ubiquitin-conjugatingenzyme protein.
          Length = 4876

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 514  WTPRRSKPIYTRRHTTPRNLRSEVTKRHYR 603
            W     KP YT R +   +  S V +RHYR
Sbjct: 4732 WIEELGKPQYTERASRTISFNSMVLRRHYR 4761


>AE014297-1135|AAF54520.3| 4876|Drosophila melanogaster CG6303-PA
            protein.
          Length = 4876

 Score = 28.3 bits (60), Expect = 8.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +1

Query: 514  WTPRRSKPIYTRRHTTPRNLRSEVTKRHYR 603
            W     KP YT R +   +  S V +RHYR
Sbjct: 4732 WIEELGKPQYTERASRTISFNSMVLRRHYR 4761


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,658,393
Number of Sequences: 53049
Number of extensions: 343846
Number of successful extensions: 806
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 806
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2482967880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)