Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d08
         (473 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.49 
SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_36023| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)                 28   3.4  
SB_23371| Best HMM Match : SRCR (HMM E-Value=0)                        27   7.9  

>SB_3972| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 2/112 (1%)
 Frame = -3

Query: 369 DRDNGALFSLFGD--NNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLH 196
           D DN    S  GD  NNG G + +    N + + D +D+ +   G+  N+  N+      
Sbjct: 3   DDDNNGAGSYDGDDDNNGTGSNDNNDDNNGASSYDDNDDDNNGAGSNDNNDDNNGAGSSD 62

Query: 195 GSSHYTTVSDRXXXXXXXXXXXXXXXDECRSNGNRFKDTGRSHGDQGEGNEE 40
           G  +    +                  +  +NG    D   ++GD    N++
Sbjct: 63  GGDYDNNGAGSNDNDDNNGTGSYDDDGDDDNNGAGSNDNDDNNGDGSNDNDD 114



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 22/63 (34%), Positives = 31/63 (49%)
 Frame = -3

Query: 369 DRDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGS 190
           D +NGA  +   DNNG G + +    N +GN D +D           + SNDN +  +GS
Sbjct: 91  DDNNGAGSNDNDDNNGDGSNDNDD-NNGNGNYDDNDN-------NNGACSNDNGNDNNGS 142

Query: 189 SHY 181
            HY
Sbjct: 143 YHY 145


>SB_50209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 473

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -3

Query: 333 DNNGVGLDFSGSIRN---TSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTTVSD 166
           DNN    DF+ S RN      N   +DE +K      N  +N+N S    S++ +  +D
Sbjct: 310 DNNSNNNDFNNSNRNDHNVDNNSHNNDEKNKSNSNDNNDENNNNNSNNKDSNNKSNNND 368



 Score = 27.9 bits (59), Expect = 4.5
 Identities = 13/55 (23%), Positives = 23/55 (41%)
 Frame = -3

Query: 330 NNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHYTTVSD 166
           NN +  +   +  N  GN   +   H       NS +NDN S  + + + +  +D
Sbjct: 263 NNALYNNVDNNSNNNHGNNKSNSNDHNNENNNNNSNNNDNNSNSNNNDNNSNNND 317


>SB_55828| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 22/60 (36%), Positives = 27/60 (45%)
 Frame = -3

Query: 366 RDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSS 187
           RD G +    GDNNG G D  G     SG+    D+        G S  +D+ SG  GSS
Sbjct: 112 RDGGKVDVSGGDNNGSGDDDGGG----SGSGGSSDDGGSGDNNNGVSSDDDDGSGSGGSS 167


>SB_36023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 55

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 300 SIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHGSSHY 181
           +I N    VD+ D        GG+SR+ D  SGL  S+ Y
Sbjct: 15  AIANADNLVDIVDGKRSCVDPGGDSRNRDTTSGLVNSNSY 54


>SB_28996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 282 GNVDVHDELHKRR--GTGGNSRSNDNRSGLHGSS 187
           G + V  + HK++  G GG+ R  +  SG +GS+
Sbjct: 19  GGIPVLSQCHKKKKSGDGGSERGRERESGAYGSN 52


>SB_26758| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-40)
          Length = 1413

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = -3

Query: 333 DNNGVGLDFSGSIRNTSGNVDVHDELHKRRGTGGNSRSNDNRSGLHG 193
           +NN  G      + N+SG+ D  D+++  RG G  +  +D+RS   G
Sbjct: 132 NNNSSGGCCDDDVNNSSGSCD--DDVNIGRGDGDGNNGSDDRSNNSG 176


>SB_23371| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 345

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = -3

Query: 369 DRDNGALFSLFGDNNGVGLDFSGSIRNTSGNVDVHD 262
           D D G      GDNNG G D +G   N  G  D HD
Sbjct: 141 DGDGGGDDGNGGDNNGGGDDGNGG-DNNGGGCDDHD 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,778,390
Number of Sequences: 59808
Number of extensions: 107649
Number of successful extensions: 472
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)