Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8d05
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    25   0.90 
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    24   1.6  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    23   3.6  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    23   3.6  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   4.8  

>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.90
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -3

Query: 668 YFGSTGSRERLNYIIYNNSRCCNNSFGTHRYLIINYFGST 549
           Y GS+       Y++    R  + +F  H++L++N+  ST
Sbjct: 274 YAGSSFICPEFRYLMKGIDRADSFNFNPHKWLLVNFDCST 313



 Score = 24.2 bits (50), Expect = 1.2
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -3

Query: 608 CCNNSFGTHRYLIINYFGSTCSR*RLDYIIYNNSRCCNNSFGTHRYLIINYFGSTCSR*R 429
           C +N+   H  +   Y GS+       Y++    R  + +F  H++L++N+  ST     
Sbjct: 261 CNSNNIWLH--VDAAYAGSSFICPEFRYLMKGIDRADSFNFNPHKWLLVNFDCSTMWLKD 318

Query: 428 LNWII 414
            +W++
Sbjct: 319 PSWLV 323


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 368 YLIINYFGSAYSSWRLNYIIYNNSRC 291
           YL+I       S+ R NY++ NNS C
Sbjct: 377 YLVIFIQFDQSSNSRNNYVLTNNSTC 402



 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 650 SRERLNYIIYNNSRC 606
           S  R NY++ NNS C
Sbjct: 388 SNSRNNYVLTNNSTC 402



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 578 YLIINYFGSTCSR*RLDYIIYNNSRC 501
           YL+I       S  R +Y++ NNS C
Sbjct: 377 YLVIFIQFDQSSNSRNNYVLTNNSTC 402


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 189 VDGKLINEEPKGTINDEVTPAVNEVSSGPST 281
           +D K+++     T++ +V PAV      P T
Sbjct: 163 IDSKVVDSRKNTTVSIDVFPAVARWMQDPKT 193


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 183 PTVDGKLINEEPKGTI 230
           P VDG+ + +EP  TI
Sbjct: 278 PVVDGEFLTDEPIATI 293


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 18/76 (23%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = +3

Query: 324 SPTGVSATEVINDEVSVGSKTIVAAPAV-----VVNDPIESSTGASATEVINDEVSVGS- 485
           SPT VS     +   S  S ++ AAP +      +   +  STG++++  I       S 
Sbjct: 155 SPTPVSINNNTSTSSSASSPSVTAAPHLRDSPNYIKPQLHVSTGSTSSPTIASATYTNSA 214

Query: 486 KTIVAAPAVVVNDVIE 533
            + + +PA + +  +E
Sbjct: 215 NSSIWSPASIDSFTLE 230


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 132,871
Number of Sequences: 336
Number of extensions: 2872
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)