Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8c22
         (613 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.1  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   4.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   4.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   5.4  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -1

Query: 337 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 203
           NV   +C+ + ++F  +  ++GI QN        +I ++   G F
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 511 N*KYXSHIYSYNSXRNTLYFNTIYSNY*NXQKYY 612
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 511 N*KYXSHIYSYNSXRNTLYFNTIYSNY*NXQKYY 612
           N KY S+  +YN+  N  Y N   +NY    K Y
Sbjct: 88  NYKY-SNYNNYNNNYNNNYNNNYNNNYKKLYKNY 120


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 559 TLYFNTIYSNY*NXQKYY 612
           T++ N  Y+NY N + YY
Sbjct: 311 TIHNNNNYNNYNNKKLYY 328


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 595 FNNYYKWY*NIGCSXXNYMNKYXIXIFN 512
           +NNY   Y N      NY N Y    +N
Sbjct: 327 YNNYNNNYNNYNNYNNNYNNNYKKLYYN 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,461
Number of Sequences: 438
Number of extensions: 1829
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)