Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8c14
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.6  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    26   3.4  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   6.0  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   6.0  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   7.9  
SPAC22E12.16c |pik1||phosphatidylinositol kinase Pik1|Schizosacc...    25   7.9  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   7.9  
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    25   7.9  

>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 371 SMLLLTSICLSFGSALSTGNGVMYVTSCPL 282
           S++ L+ +C S       GN + Y+T CP+
Sbjct: 617 SLIGLSELCPSIEELTLEGNEIAYLTGCPV 646


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -1

Query: 457 LQDESHRDQLSVLYPRGSHLNLGKSWVEYLCY 362
           LQ   H +Q S++YP  S  +  K W  Y  Y
Sbjct: 83  LQRSHHEEQPSLVYPSSSFSSTSKFW-RYFAY 113


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -2

Query: 558 EHPFSNDDIELLFWIVD*SRNILIVVCVHLYCVHYKMN 445
           ++ FSN     LFW++    N ++   +HLY  +++M+
Sbjct: 69  KNSFSNLHFFFLFWLL----NFILFFRIHLYSCNFRMS 102


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 416 PSRITFKFREVLGRISMLLLTSI 348
           PS+ T K+R + GR+  L L  I
Sbjct: 572 PSQFTIKYRSIAGRVHRLRLDGI 594


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +1

Query: 445 IHLVMNAVEMNTYNN-----ENVSRLINDPKQKFDIVIAEWM 555
           IH  +  VE+N  ++     +     I  P +K DI+++EWM
Sbjct: 89  IHKAVQIVEVNKLSDRITLIQGKMEEIQLPVEKVDIIVSEWM 130


>SPAC22E12.16c |pik1||phosphatidylinositol kinase
           Pik1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)
 Frame = +1

Query: 247 ILGYGIVKHLLKRGHEVTYITPFPVDNADPKLKQIDVSSNIDILPKTSLN-LNVILEGKV 423
           +LG   V  LLK+   +           DP    +DV   +   P+ SL+ L   L   +
Sbjct: 155 MLGGVCVPELLKKAGPIAIAQGRKAPRQDPDESDVDVLRRLSTEPRYSLDVLRSSLNNSI 214

Query: 424 PKVDHGGIHLVMNAVEMNTYNNENVSRLINDPKQK 528
            +  H  + L + A E+   ++   S  ++  +Q+
Sbjct: 215 VE-QHSEVSLRLKAPELTRTHSYQSSATLSIDEQR 248


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +3

Query: 162 VFMRHIIAVHV*RLQGVGRLFYAREESQHTRIWNCK 269
           VFMRH   V        GR     + S    IW+CK
Sbjct: 470 VFMRHTAPVSALSFSHNGRYLATGDTSGGVCIWSCK 505


>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1325

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 334  PKLKQIDVSSNIDILPKTSLNLN 402
            PK+ ++ V+  +D++PK   +LN
Sbjct: 948  PKIHEVGVNKMLDVVPKEKRDLN 970


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,186
Number of Sequences: 5004
Number of extensions: 51957
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)