Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8c14
(577 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0792 + 6166230-6166795,6166879-6166981,6167089-6167227,616... 32 0.38
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 30 1.1
12_01_1064 - 10978039-10978190,10978731-10978865,10979217-109796... 30 1.5
07_03_0987 - 23155134-23155693,23155781-23157023 28 4.6
04_01_0617 - 8076624-8076971,8077761-8077883,8077965-8078035,807... 28 4.6
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 28 4.6
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 28 6.1
02_02_0419 - 10009686-10012568 27 8.1
>07_01_0792 +
6166230-6166795,6166879-6166981,6167089-6167227,
6167641-6167918,6168448-6168612
Length = 416
Score = 31.9 bits (69), Expect = 0.38
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +1
Query: 205 KVLVVFSMPGKSHSILGYGIVKHLLKRGHEVTYIT 309
K +++ + G H+++G+ + K LL GH VT +T
Sbjct: 71 KSVLIVNTNGGGHAVIGFYLAKDLLAAGHAVTVLT 105
>06_03_0038 -
15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 250 LGYGIVKHLLKRGHEVTYITPFPVDNADPKLKQIDVSSNIDIL 378
LG G + + G E +T + +D DPKL ID+S N I+
Sbjct: 100 LGLGELAKMTLNGLEQPDLTCWLMDRTDPKLMTIDISENKKIV 142
>12_01_1064 -
10978039-10978190,10978731-10978865,10979217-10979605,
10979669-10979892,10980011-10980172,10980256-10980906,
10981583-10981804
Length = 644
Score = 29.9 bits (64), Expect = 1.5
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 8/106 (7%)
Frame = +1
Query: 235 KSHSILGYGIVKHLLKRGHEVTYITPFPVDNADPKLKQIDVSSN--IDILP-KTSLNLNV 405
++ + LG G + + G E +T + +D DPK ID+S N + I P K L V
Sbjct: 104 QAFAALGLGDLAKMTLNGLEQPDLTCWLMDRTDPKSMTIDISENKKMVITPWKVKTVLGV 163
Query: 406 ILEG---KVPKVDHGGIHLVMNAVEMNTYNNENV--SRLINDPKQK 528
L G ++P D L A+E++ ++ SRLI + K +
Sbjct: 164 PLGGEPLQLPDQDIMSDALADLAIELDLPPKSDITASRLIEEIKNR 209
>07_03_0987 - 23155134-23155693,23155781-23157023
Length = 600
Score = 28.3 bits (60), Expect = 4.6
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 6/121 (4%)
Frame = +1
Query: 193 CDAYKVLVVF----SMPGKSHSILGYGIVKHLLKRGHEVTYITPFPVDNA-DPKLKQIDV 357
C +V+ VF S+ G +LG + L R + ++ P P+DN+ P+L+ + V
Sbjct: 70 CSRGRVVGVFLDNASLVGGLAPLLGLARLGVLAVRRNSLSGRLP-PLDNSTSPRLRHLLV 128
Query: 358 SSNIDILPKTSLNLNVILEGKVP-KVDHGGIHLVMNAVEMNTYNNENVSRLINDPKQKFD 534
S N + + L V L V + +H G H + A+ + + NVSR + D + D
Sbjct: 129 SHN-----QLTGGLRVSLPSLVTLRAEHNGFHGDLRALSVPMVRSFNVSRNMLDGEISGD 183
Query: 535 I 537
+
Sbjct: 184 L 184
>04_01_0617 -
8076624-8076971,8077761-8077883,8077965-8078035,
8078108-8078360,8078613-8078768,8078854-8079770,
8079858-8079927,8082310-8082416,8082722-8082755,
8083621-8083940,8084031-8084820,8084890-8085046,
8085647-8086068
Length = 1255
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +1
Query: 280 KRGHEVTYITPFPVDNADPKLKQIDVSSNIDILPKTSL---NLNVILEGK 420
KRG ++ + P DN K + DV ++ D KT++ +L+V++E K
Sbjct: 455 KRGTSISIVEPDTWDNGCEKKRDFDVPASEDQHAKTNMVNSDLHVLVEAK 504
>01_06_1123 +
34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 28.3 bits (60), Expect = 4.6
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Frame = +1
Query: 310 PFPVDNADPKLKQIDVSSNIDILPKTSLNLNVILEGKVPKVDHGGIH---LVMNAVEMNT 480
PFP D K K ++ SS+ I+P+ + + E K + G VM + N
Sbjct: 592 PFPPDYFAKKNKPVENSSDAGIVPEGPPSAEKLPETKYSSGNLGNFQNSSQVMGSQAANN 651
Query: 481 YNNEN 495
NNEN
Sbjct: 652 MNNEN 656
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 27.9 bits (59), Expect = 6.1
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 490 ENVSRLINDPKQKFDIVIAEWM 555
E ++ I P KFD++++EWM
Sbjct: 364 EELNHKIQVPSNKFDVLVSEWM 385
>02_02_0419 - 10009686-10012568
Length = 960
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/28 (46%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Frame = +1
Query: 310 PFPVDNADPKLKQIDVSSNI--DILPKT 387
PFP + P+L ++DVSSN+ I+P+T
Sbjct: 553 PFPQEFGAPELVELDVSSNMISGIVPET 580
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,862,815
Number of Sequences: 37544
Number of extensions: 302818
Number of successful extensions: 754
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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