Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8c08
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.80 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   3.2  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   5.6  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.8  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 523 NXIFIHIIPQGTPYILIPFIVIIETIRKYY 612
           N I+ +  P+  PYI I F+VII     YY
Sbjct: 207 NEIYYNCCPE--PYIDITFVVIIRRRTLYY 234


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -1

Query: 336 NVLNSLCNFFEMKFHIIKCRFGINQNLYGINNNPKIVLIQFIGKF 202
           NV   +C+ + ++F  +  ++GI QN        +I ++   G F
Sbjct: 48  NVPTFMCHKYGLRFEEVSEKYGILQNWMDKFRGEEIAILYDPGMF 92


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +3

Query: 519 YKSHIYSYNSXRNTLYFNTIYSNY*NHQKILF 614
           + ++ Y YN   N    N   +NY N+ K L+
Sbjct: 324 HNNNNYKYNYNNNNYNNNNYNNNYNNNCKKLY 355


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 281 HFII*NF-ISKKLHXEFKTLLKNNYF 355
           +F+  N+ I K+ H E   L++N YF
Sbjct: 370 YFLDYNYTIPKEKHVEVARLIRNYYF 395


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = -1

Query: 594 FNNYYKWY*NIGCSLXNYMNKYXICIFN 511
           +NNY   Y N      NY N Y    +N
Sbjct: 327 YNNYNNNYNNYNNYNNNYNNNYKKLYYN 354


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 281 HFII*NF-ISKKLHXEFKTLLKNNYF 355
           +F+  N+ I K+ H E   L++N YF
Sbjct: 370 YFLDYNYTIPKEKHVEVARLIRNYYF 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,408
Number of Sequences: 438
Number of extensions: 1863
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)