Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8c05
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0376 - 16965504-16966101,16966212-16966416,16967175-169681...    28   6.1  
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981...    27   8.1  

>11_04_0376 -
           16965504-16966101,16966212-16966416,16967175-16968197,
           16968241-16968892,16969025-16969387,16970095-16970451
          Length = 1065

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = -2

Query: 242 EVYKRNVITDEASFWKVYVLLACWFMMREERAQCRGIATVTSEQLNDVLVVCRTKGSGER 63
           ++Y  N ++ + S W ++   A         A    IA + SE+   + +V +T GS  R
Sbjct: 299 QMYNMNCLSPDES-WSLFKQTAFTEQENISPANLVEIARMVSEKCKGLPLVIKTVGSILR 357

Query: 62  FE*NEL 45
           FE NE+
Sbjct: 358 FETNEI 363


>01_03_0149 +
           13194866-13195012,13196576-13196828,13197810-13198173,
           13198283-13198501,13199888-13200002,13200697-13200948,
           13201149-13201442
          Length = 547

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -1

Query: 504 SHIMLFHIPSNVNEFLLPFCCININIFTLLY 412
           ++I ++ I +  NE +L F  +N N+  LLY
Sbjct: 216 NYIPIYEIEATRNETILEFAKLNFNLLQLLY 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,698,367
Number of Sequences: 37544
Number of extensions: 185397
Number of successful extensions: 434
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)