Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8b18
         (223 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    23   5.5  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    23   5.5  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    23   7.2  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    22   9.5  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    22   9.5  

>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 114 CFKLYFEHVNIFSSSERYEQITSSFSIY 31
           CF  YF   ++ SS   Y+++  S  +Y
Sbjct: 21  CFVKYFPKCSVQSSFHSYDELAFSRRLY 48


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 101  ISNM*IFLVPQNVTNRLLRRFQFTQEIF 18
            I  + +F+ P  V N +++RF+FT  ++
Sbjct: 944  IQTILMFVDPNLVLNAVVQRFEFTDWLY 971


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 108  KLYFEHVNIFSSSERYEQITSS 43
            +LYFE++ + +  + YEQ +SS
Sbjct: 1069 RLYFENIGLETVLDIYEQESSS 1090


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 87  NIFSSSERYEQITSSFSIYTR 25
           N+F +S    Q TSSFS Y +
Sbjct: 513 NLFPTSNSGNQSTSSFSRYNQ 533


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +2

Query: 2   FFIKVKIFLV*IENDEVICS-*RSEEL 79
           F  K KIFL   E +E +CS  RS EL
Sbjct: 402 FLAKAKIFLCMGEIEEALCSFKRSVEL 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 396,811
Number of Sequences: 5004
Number of extensions: 3851
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 53
effective length of database: 2,097,266
effective search space used: 41945320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)