Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8b18
         (223 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical p...    25   7.3  
AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical...    25   7.3  
AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear recep...    25   7.3  
AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear recep...    25   7.3  
AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear recep...    25   7.3  
U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical p...    25   9.6  

>Z98877-17|CAB11571.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 84  IFSSSERYEQITSSFSIYTRNI 19
           + SS +      SSFSIY RN+
Sbjct: 258 LMSSEDAVRMFASSFSIYRRNV 279


>AL021497-21|CAA16413.1|  389|Caenorhabditis elegans Hypothetical
           protein Y51A2D.17 protein.
          Length = 389

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 84  IFSSSERYEQITSSFSIYTRNI 19
           + SS +      SSFSIY RN+
Sbjct: 258 LMSSEDAVRMFASSFSIYRRNV 279


>AF273823-1|AAG15172.1|  388|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 84  IFSSSERYEQITSSFSIYTRNI 19
           + SS +      SSFSIY RN+
Sbjct: 257 LMSSEDAVRMFASSFSIYRRNV 278


>AF273822-1|AAG15171.1|  387|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 387

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 84  IFSSSERYEQITSSFSIYTRNI 19
           + SS +      SSFSIY RN+
Sbjct: 256 LMSSEDAVRMFASSFSIYRRNV 277


>AF273821-1|AAG15170.1|  383|Caenorhabditis elegans nuclear receptor
           NHR-70 protein.
          Length = 383

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -2

Query: 84  IFSSSERYEQITSSFSIYTRNI 19
           + SS +      SSFSIY RN+
Sbjct: 252 LMSSEDAVRMFASSFSIYRRNV 273


>U55363-12|AAA97969.1|  320|Caenorhabditis elegans Hypothetical
           protein ZC404.11 protein.
          Length = 320

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -2

Query: 102 YFEHVNIFSSSERYEQITSSFSIYT 28
           Y++H++IF +   +   T+SF IY+
Sbjct: 262 YYQHLSIFMNILAFFNTTTSFIIYS 286


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,154,995
Number of Sequences: 27780
Number of extensions: 20878
Number of successful extensions: 48
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)