Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8b12
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.53
SPCC1235.10c |sec6||exocyst complex subunit Sec6|Schizosaccharom... 26 3.7
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc... 26 4.9
SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual 26 4.9
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 25 6.5
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos... 25 6.5
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 8.6
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 25 8.6
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 25 8.6
SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces po... 25 8.6
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 29.1 bits (62), Expect = 0.53
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 472 VPAK*RQTGLQSLSGHFVGSSAWKCAFCAIS-GTIPGRCFSRGLVKYPSRSLPS 314
+PA+ R L LS HF+ S + + + I T G+C+ LVK P ++ P+
Sbjct: 53 LPARTRSVAL--LSSHFLQSESGRHSIANILIATENGKCYLLQLVKTPEKAFPT 104
>SPCC1235.10c |sec6||exocyst complex subunit
Sec6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 730
Score = 26.2 bits (55), Expect = 3.7
Identities = 11/55 (20%), Positives = 26/55 (47%)
Frame = -1
Query: 510 PLNYDDANKNDHQFLLNEDKLVYNLCQATLLVAVLGNVPFVLSLVRFLEGVSQED 346
P+ +++ N + N D+LV N C+ + G++ ++ + + +E D
Sbjct: 152 PITLENSFSNLNTLSDNFDRLVLNFCRNIFQLVKSGHIKTIVQIFKIVEAEESSD 206
>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1050
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 433 SGHFVGSSAWKCAFCAISGTIPGRCFSRGLVKYPSRSLPSATFCS 299
+G+ S + F A +G + G S G +K PSRS+P T S
Sbjct: 287 TGYESFKSTFGVFFPATAGLLAGASMS-GDLKAPSRSIPKGTISS 330
>SPAC343.06c |||scramblase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 4.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = -3
Query: 211 RKFSGLPQPFVKNFVNRILRYTASN 137
R F GLP+ F + N +LR+T+++
Sbjct: 231 RNFMGLPREFFTDTGNYVLRFTSTS 255
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +3
Query: 135 KLDAVYRSILLTKFFTKGWGKPENLR 212
K DAVYR+ ++ K+F + K N++
Sbjct: 193 KADAVYRAFIMLKYFPRWVQKLRNIQ 218
>SPBC725.07 |pex5||peroxisomal targeting signal receptor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 253 SSRFDTTFLNSNNLRKFSGLPQPFVKNF 170
+S F FLNS+ +F L QP ++F
Sbjct: 113 TSEFSEVFLNSSENDRFRNLNQPLKQSF 140
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -1
Query: 513 SPLNYDDANKNDHQFLLNEDKLVYNLCQATLLVA 412
SP++YDD+N + + F D Y A+ + A
Sbjct: 335 SPVSYDDSNSSQYNFKWEFDDKTYGPYTASQIQA 368
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +1
Query: 181 RKAGVSRKTCADYSSSEKLYRI-VKNASNWLKETIPSPLLRNKMSPRASFLKDTSL 345
+ + + R A + K++R+ + A + +KE + +L MSP FLK L
Sbjct: 344 KSSAIQRSGRAGRTMRGKVFRLYTEKAYSLMKEEFEADILNCDMSPLVLFLKGLGL 399
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +2
Query: 356 ETPSRNRTRDSTKGTFPS 409
ETPSRNR R ST PS
Sbjct: 40 ETPSRNRKRVSTTRRTPS 57
>SPCC1753.05 |rsm1||RNA export factor Rsm1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 296
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 141 DAVYRSILLTKFFTKGWGKPENLRRLFEFR 230
D + +S+ +K K W + E LRRL +R
Sbjct: 25 DILLKSLKASKCTYKPWSREEFLRRLLTYR 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,059
Number of Sequences: 5004
Number of extensions: 54878
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -