Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8b12
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0711 - 5324079-5324141,5324900-5324962,5325329-5325642,532...    40   0.001
08_01_0461 - 4063614-4064375,4064439-4066017,4066041-4066086,406...    29   2.9  
02_01_0599 - 4455151-4455915,4455999-4456098,4456176-4456222,445...    29   2.9  
01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773           28   5.1  
08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562           28   6.7  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   6.7  
11_01_0758 + 6362500-6363233,6363709-6365500                           27   8.9  

>02_01_0711 -
           5324079-5324141,5324900-5324962,5325329-5325642,
           5326076-5326245,5326347-5326431,5326775-5327015
          Length = 311

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 30/81 (37%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
 Frame = +3

Query: 324 LLEGYFTSPLEKHLPGIVPEIAQKAHFQALLPTKWPDKDCKPVC-LHLAGTGDHFYWRRR 500
           L EG F +  +  L   +P  +  A    L P     +  K  C +HLAGTGDH + RR 
Sbjct: 34  LREGVFRTTCDPRLIEALPPESHNARVAFLTPKSVSPE--KMACVIHLAGTGDHSFERRL 91

Query: 501 NLMVKPLLKEAGIGGIILENP 563
            L   PLLK+  I  ++LE+P
Sbjct: 92  RL-GGPLLKD-NIATMVLESP 110


>08_01_0461 -
           4063614-4064375,4064439-4066017,4066041-4066086,
           4066416-4066933,4067435-4067694,4068089-4068594,
           4068667-4071319
          Length = 2107

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = -3

Query: 205 FSGLPQPFVKNFVNRILRYTASNLLADILYVILIENKIVFKLKL 74
           FSG  +PF ++ +NRILR   SN L D L   + +  ++F L L
Sbjct: 389 FSGDYEPFSRDVINRILRIIWSN-LEDPLSQTVKQVHLIFDLLL 431


>02_01_0599 -
           4455151-4455915,4455999-4456098,4456176-4456222,
           4456566-4456612,4457299-4457461,4458013-4458042
          Length = 383

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
 Frame = +3

Query: 129 ASKLDAVYRSILLTKFFTKGWGKPENLRR-------LFEFRKVVSNREECFKLVER 275
           A+ ++AV   I++ +   K W K EN+RR       LF F K++  R++   L+E+
Sbjct: 317 AAHIEAVTEKIIMEEEKWKKW-KTENIRRKHNYVPFLFNFLKILEERQQLKPLIEK 371


>01_01_1211 + 9753518-9753894,9754265-9754313,9754747-9754773
          Length = 150

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 17/32 (53%), Positives = 19/32 (59%)
 Frame = -3

Query: 388 AISGTIPGRCFSRGLVKYPSRSLPSATFCSLV 293
           A SG+  GRCFSR   + PS  LP   F SLV
Sbjct: 94  AASGSSYGRCFSR--PQPPSMKLPVILFFSLV 123


>08_01_0781 + 7570485-7570796,7570808-7570885,7570963-7571562
          Length = 329

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 204 NLRRLFEFRKVVSNREECFKLVERDYPVTITKEQNVAEGKLL 329
           N   L  F K VS  + C++ +ER +P  I  ++ V E + L
Sbjct: 96  NANSLEHFGKEVSKFQGCYEQIERRHPSGIPHQELVLEAEAL 137


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 532 PVLAVSFLRTPFYGLRKPIDQSV 600
           P   V+F+R P Y LR P+D+ +
Sbjct: 402 PEYEVAFIRVPLYELRDPVDKGL 424


>11_01_0758 + 6362500-6363233,6363709-6365500
          Length = 841

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 199 GLPQPFVKNFVNRILRYTASNLLADILYVILIENKIV 89
           GL QP   N+ ++++ Y  +N++ DI+    IE   +
Sbjct: 451 GLIQPIDINYNDKVVHYAVNNMVLDIITYKSIEENFI 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,044,928
Number of Sequences: 37544
Number of extensions: 304970
Number of successful extensions: 776
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 776
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)