Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8b12
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical pr...    99   1e-21
AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical ...    30   1.5  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical ...    28   4.6  
U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b ...    27   8.0  

>Z75533-6|CAA99819.1|  378|Caenorhabditis elegans Hypothetical
           protein C54G4.7 protein.
          Length = 378

 Score =   99 bits (238), Expect = 1e-21
 Identities = 56/147 (38%), Positives = 87/147 (59%), Gaps = 2/147 (1%)
 Frame = +3

Query: 129 ASKLDAVYRSIL-LTKFFTKGWGKPENLRRLFEFRKVVSNREECFKLVERDYP-VTITKE 302
           A  +D  +RS L L++ FTK WG P+ ++++ ++R+ V ++      V+   P + I K+
Sbjct: 12  AKHVDLKFRSALVLSQLFTKSWGHPDVIKQMAKYRRDVMSKRLVMDYVKELNPKIDIVKK 71

Query: 303 QNVAEGKLLEGYFTSPLEKHLPGIVPEIAQKAHFQALLPTKWPDKDCKPVCLHLAGTGDH 482
            +       EG+F SP     P  +P    +AHF+A LP K P     PVC+HLAGTGDH
Sbjct: 72  YSKNGVTSYEGFFASPHATLFPNHMPGNVGRAHFRAYLPQK-PG----PVCIHLAGTGDH 126

Query: 483 FYWRRRNLMVKPLLKEAGIGGIILENP 563
            Y+RR  L+V  +LK+ G+G I+++NP
Sbjct: 127 SYFRRHYLLVDDMLKD-GVGSILIQNP 152


>AF040642-9|AAB94950.1|  589|Caenorhabditis elegans Hypothetical
           protein C50D2.2 protein.
          Length = 589

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -3

Query: 436 LSGHFVGSSAWKCAFCAISGTIPGRCFSRGLVKYPSRSLPSATFCSLVMVT 284
           +SG F G+++  C F  I     G   +    K P+RS+P ATF S+ +VT
Sbjct: 232 VSGMFAGAAS--CFFAYIG--FDGLATAGEEAKDPARSIPIATFSSMTIVT 278


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +3

Query: 84  LKTILFSIKIT*RMS--ASKLDAVYRSILLTKFFTKGWGKPENLRRLFEFRKVVSNREEC 257
           +K + FS  I  R+S    K D+V R+ L+ K +   + +  +   +  + +   N E  
Sbjct: 673 IKALQFSESILNRISNITEKTDSVERAKLILKNYRILYDEAVDFMGITSYLRTRLNTE-- 730

Query: 258 FKLVERDYPVTITKEQN 308
           F ++E DY +T+T+ +N
Sbjct: 731 FFVMEEDYLLTVTQTEN 747


>AF045641-2|AAC02578.2| 1370|Caenorhabditis elegans Hypothetical
            protein F53H1.4a protein.
          Length = 1370

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 19/64 (29%), Positives = 29/64 (45%)
 Frame = -3

Query: 373  IPGRCFSRGLVKYPSRSLPSATFCSLVMVTG*SLSTNLKHSSRFDTTFLNSNNLRKFSGL 194
            IPG+  S    ++ +RSLP       V  +   L  +L    R    ++ ++N RKFS  
Sbjct: 1281 IPGQSRSTRNAQHENRSLPDIEQDLDVYTSAEQLHEHLSQFFRHARGYIETHNPRKFSKF 1340

Query: 193  PQPF 182
              PF
Sbjct: 1341 SCPF 1344


>U53340-6|AAA96210.1|  305|Caenorhabditis elegans Atp synthase b
           homolog protein 2 protein.
          Length = 305

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 93  ILFSIKIT*RMSASKLD-AVYRSILLTKFFTKGWGKPENLRRLFEFRKVVSNREECFKLV 269
           ILF + +T R +  K+D  +Y        F KG  + E+L+   EF+K  + + E    +
Sbjct: 159 ILFYLLVT-RTAGYKIDQGLYNGYQERVNFFKGLIQ-EDLKEAVEFKKTSAKQTESLNSI 216

Query: 270 ERDYPVTI 293
           +  YP  +
Sbjct: 217 KESYPTAL 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,471
Number of Sequences: 27780
Number of extensions: 290158
Number of successful extensions: 834
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)