Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8b12
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   1.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   4.1  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   4.1  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   9.5  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 246 REECFKLVERD-YPVTITKEQNVAEGKLLEGYFTSPLEK 359
           RE+   ++E D +P+T+   +N  E K  +   T P E+
Sbjct: 519 REQKNLMIELDKFPITLQPGKNTIEQKSTKSSVTIPFER 557


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +3

Query: 3   YFKFNQSFLFQPIC*RNKLGNQSYNFNLKTILFSIKIT*RMSASKLDAVY 152
           +FK  +S  FQ +   N   +  + +  KTIL+ +K+T ++S +    +Y
Sbjct: 124 FFKNAKSVTFQTMTIPN---HYLWLYKDKTILYMVKLTLKLSCAMNFLIY 170


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 277 SLSTNLKHSSRFDTTFLNSNNLRKFSGLPQPFVKNFVNRI 158
           SLS N K+S+  +    N+NN   ++   + + KN++  I
Sbjct: 317 SLSNNYKYSNYNNYNNYNNNNYNNYN--KKLYYKNYIINI 354


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -1

Query: 504 NYDDANKNDHQFLLNEDKLVYNL 436
           NY++ N  ++ +  N  KL YN+
Sbjct: 333 NYNNYNNYNNNYNNNYKKLYYNI 355


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,068
Number of Sequences: 438
Number of extensions: 3815
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)