Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8b10
         (516 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4M6D9 Cluster: 4-diphosphocytidyl-2C-methyl-D-erythrit...    35   0.96 
UniRef50_Q6DVI0 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    33   5.1  
UniRef50_A7SEN1 Cluster: Predicted protein; n=1; Nematostella ve...    33   5.1  

>UniRef50_A4M6D9 Cluster: 4-diphosphocytidyl-2C-methyl-D-erythritol
           synthase; n=1; Petrotoga mobilis SJ95|Rep:
           4-diphosphocytidyl-2C-methyl-D-erythritol synthase -
           Petrotoga mobilis SJ95
          Length = 227

 Score = 35.1 bits (77), Expect = 0.96
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 11/71 (15%)
 Frame = +2

Query: 299 YCYHAPHAFFKKKLIKAY*KATELAG-----AAAFV---YKTTCV---PTHLKL*KKNDF 445
           Y +H P  F   KL+KAY KA ++       A+ F+   Y+T  V     ++KL KK DF
Sbjct: 157 YLHHTPQTFDFNKLLKAYQKAEKILSSFTDDASIFIHAGYETAIVEDYKNNIKLTKKEDF 216

Query: 446 SLYYIVSQFNS 478
            L   + + NS
Sbjct: 217 ELAKCIFELNS 227


>UniRef50_Q6DVI0 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=1; Onychiurus orientalis|Rep: NADH-ubiquinone
           oxidoreductase chain 2 - Onychiurus orientalis
          Length = 335

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 20/61 (32%), Positives = 34/61 (55%)
 Frame = -3

Query: 322 SVWCMVTVVINIL*TEMSRRVILIIS*KAPHAFFYNKIIFSYTIFNSNLLKCIIYFLVRF 143
           S+  M+ + +N+L       +ILI+S      +FY ++IFS ++ +SNLL    + L  F
Sbjct: 257 SIMVMINLSVNLL-----TLIILILS-SLLALYFYIRLIFSASVISSNLLNMNFFLLKNF 310

Query: 142 S 140
           S
Sbjct: 311 S 311


>UniRef50_A7SEN1 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 897

 Score = 32.7 bits (71), Expect = 5.1
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 185 VKNSVRKNDFIVKKSVGCFSGYY 253
           ++N VRKN F++KK +GC S ++
Sbjct: 875 LQNQVRKNIFLIKKCLGCISSFF 897


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 389,583,305
Number of Sequences: 1657284
Number of extensions: 6322351
Number of successful extensions: 10214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10211
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 31782822356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)