Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8b10
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    26   0.20 
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    25   0.61 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    23   1.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    23   1.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    23   1.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   1.4  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    23   1.9  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   5.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   5.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   5.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   5.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.5  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   10.0 

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 341 LASS*KKRVVHGNSSYKYFMNRDE*KGYFD-NILKSTP 231
           + SS   + +H N++YKY  N +  K Y++ N ++  P
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNCKKLYYNINYIEQIP 118


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -2

Query: 341 LASS*KKRVVHGNSSYKYFMNRD 273
           + SS   R +H N++YKY  N +
Sbjct: 81  IISSLSNRTIHNNNNYKYNYNNN 103


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 341 LASS*KKRVVHGNSSYKYFMNRD 273
           + SS   + +H N++YKY  N +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNN 103


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 341 LASS*KKRVVHGNSSYKYFMNRD 273
           + SS   + +H N++YKY  N +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNN 103


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 341 LASS*KKRVVHGNSSYKYFMNRD 273
           + SS   + +H N++YKY  N +
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNN 103


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 341 LASS*KKRVVHGNSSYKYFMNRD 273
           + SS   + +H N++YKY  N +
Sbjct: 314 IISSLSNKTIHNNNNYKYNYNNN 336


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -2

Query: 341 LASS*KKRVVHGNSSYKYFMN 279
           + SS   + +H N++YKY  N
Sbjct: 81  IISSLSNKTIHNNNNYKYNYN 101


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 461 LYNRD*NHFFFIILDV*GHRLFCKQM 384
           L+  + + ++  I+D  GHR F K M
Sbjct: 4   LWKFETSKYYVTIIDAPGHRDFIKNM 29


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 223 FYNKIIFSYTIFNSNLLKCIIYFLVRFSI 137
           FYN     Y+  +S  + CII   + ++I
Sbjct: 338 FYNTDFIIYSSLSSFYIPCIIMVFLYYNI 366


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 250 IS*KAPHAFFYNKIIFSYTIF 188
           +S + PH F Y ++  +YT F
Sbjct: 364 VSVEQPHLFLYPEVSSTYTGF 384


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 461 LYNRD*NHFFFIILDV*GHRLFCKQM 384
           L+  + + ++  I+D  GHR F K M
Sbjct: 20  LWKFETSKYYVTIIDAPGHRDFIKNM 45


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -2

Query: 461 LYNRD*NHFFFIILDV*GHRLFCKQM 384
           L+  + + ++  I+D  GHR F K M
Sbjct: 77  LWKFETSKYYVTIIDAPGHRDFIKNM 102


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 437 FFFIILDV*GHRLFCKQM 384
           ++  I+D  GHR F K M
Sbjct: 85  YYVTIIDAPGHRDFIKNM 102


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -3

Query: 205 FSYTIFNSNLLKCIIYFL 152
           F YT  N N   C IYFL
Sbjct: 80  FLYTSKNDNEEVCGIYFL 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,957
Number of Sequences: 438
Number of extensions: 2132
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)