Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8b06
         (559 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   4.3  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    26   4.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   4.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   7.5  
SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyce...    25   10.0 

>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 98  HAQQKLSL*TELKVRSLHCSGSTLS 24
           H QQ+ S    L VR L C  STLS
Sbjct: 159 HTQQRYSTLKRLMVRCLSCEYSTLS 183


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 307 WVQRMALSCSRLHGNTSCLFVLSL 236
           W+  +AL+ SR +GNT  L  L L
Sbjct: 189 WMDSVALNLSRYYGNTEALSSLPL 212


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
 Frame = -1

Query: 313  AAWVQRMALSCSRLHGN---TSCLFVLSLAVLRAVQAELHQCHHRRDLQILPLG 161
            A+W +R   SCS++        C F      L  +     +C H+   + L LG
Sbjct: 2091 ASWTERRLQSCSQIEVTLPCVECFFKYKKDALHTLLPGFMRCFHKVAKEFLSLG 2144


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
 Frame = -2

Query: 549  LPALMSFSTTRTHPKA----IKQKFRMWKQIKLNHSE 451
            LP L+SFS+  T P+     I Q F  W Q K N SE
Sbjct: 1960 LPKLVSFSSASTEPRKLALDIVQTFINW-QRKQNESE 1995


>SPBC609.05 |pob3||FACT complex component Pob3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 512

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -2

Query: 297 GWRSPALAFTETLPV 253
           GW+SP+LA   TLP+
Sbjct: 30  GWKSPSLAEPFTLPI 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,134,407
Number of Sequences: 5004
Number of extensions: 40053
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)