Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8b06
(559 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0250 + 10955281-10955419,10955524-10955727,10955985-109560... 31 0.82
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 30 1.1
09_04_0323 - 16679565-16679939,16680328-16680660,16680721-166810... 29 2.5
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 29 2.5
11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084 29 3.3
06_01_0866 + 6582131-6583294 28 5.8
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 5.8
01_06_0926 + 33075575-33076618 28 5.8
07_01_0593 + 4417753-4417759,4418240-4419698,4419819-4421301,442... 27 7.7
>05_03_0250 +
10955281-10955419,10955524-10955727,10955985-10956065,
10956147-10956287,10956378-10956410,10956809-10956909,
10957282-10957912,10959378-10959514
Length = 488
Score = 30.7 bits (66), Expect = 0.82
Identities = 15/29 (51%), Positives = 17/29 (58%)
Frame = +1
Query: 7 MHDRGTDSVEPLQCKLLTFNSVYNDSFCC 93
+HDR D PL+CK LT S D FCC
Sbjct: 376 LHDRVGDFNTPLRCKKLT-QSYEVDGFCC 403
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -3
Query: 338 VRLVTAATGSMGPADGALLLSPSRKHFL 255
VR V A + S+GP D + L P KHFL
Sbjct: 845 VRFVVACSESIGPVDTFVYLFPHLKHFL 872
>09_04_0323 -
16679565-16679939,16680328-16680660,16680721-16681032,
16683590-16683825,16683972-16684239
Length = 507
Score = 29.1 bits (62), Expect = 2.5
Identities = 22/56 (39%), Positives = 26/56 (46%)
Frame = +1
Query: 211 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSRTVPHTYPSSVT 378
PL VL GS+ R R RR PS+ P P AA + R PHT S +T
Sbjct: 38 PLPPAAVL-GSSPAARTRLRP---RRRPSSAPHPPPAAASTSALRPRPHTQNSELT 89
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 29.1 bits (62), Expect = 2.5
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +1
Query: 148 LTLFCLAEVSGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAV 327
L + C +E S D FC +G+R V P R S P+A P+ AA
Sbjct: 84 LNVSCASEASNDSFCSRASTGRIGRRPVGPPGVGAAHALRRAAGSAGPPAARPVARKAAA 143
Query: 328 T 330
+
Sbjct: 144 S 144
>11_03_0045 + 9253101-9253135,9253802-9253917,9255642-9256084
Length = 197
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = -3
Query: 389 SEFKVTDDG*VCGTVREVRLVTAAT-GSMGPADGALLLSPSRKHFLFICVEPGSTPR 222
SE +VT DG +V ++ + A G+ G G L PSR + + P PR
Sbjct: 35 SEVRVTFDGLQLKSVTDLEVAAAGDLGAEGEGGGGCSLGPSRSRWSPTTLRPDLAPR 91
>06_01_0866 + 6582131-6583294
Length = 387
Score = 27.9 bits (59), Expect = 5.8
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -2
Query: 351 NSARGASSHRRYRQHGSSG 295
N A+G+S HR+++ HG G
Sbjct: 354 NGAQGSSQHRQHQHHGGGG 372
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 211 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 321
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>01_06_0926 + 33075575-33076618
Length = 347
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 299 ADGALLLSPSRK-HFLFICVEPGSTPRCPSGTPSMSPQKGSPDTSAR 162
+D ++LL P+R+ H F+ P P G P +SP +P ++A+
Sbjct: 220 SDSSILLFPNRRNHVGFVIRVELGPPDEPRGDPLLSPVTHTPKSTAQ 266
>07_01_0593 +
4417753-4417759,4418240-4419698,4419819-4421301,
4421378-4421419,4421420-4421584,4421669-4421864,
4421955-4422066,4422154-4422301,4422417-4422614,
4422710-4422866,4422882-4422988,4423084-4423245,
4423314-4423562,4423676-4423810
Length = 1539
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 392 GSEFKVTDDG*VCGTVREVRLVTAATGSMGPADGALLLSPSRK 264
GS F DDG C T +L ++++ + A ++ LSP ++
Sbjct: 427 GSGFMREDDGSCCSTAESAKLSSSSSSNHQDAGVSIYLSPIKE 469
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,574,670
Number of Sequences: 37544
Number of extensions: 290326
Number of successful extensions: 877
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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