Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a22
         (426 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    96   1e-20
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    55   3e-08
04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,962...    28   3.6  
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    27   8.3  
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721...    27   8.3  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 59/141 (41%), Positives = 76/141 (53%), Gaps = 18/141 (12%)
 Frame = +2

Query: 41  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 220
           M ++K  ELR K+               + LRVAKVTGG  +KLSKI+VVR +IARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 221 YHQXMKVXLRNHYKNKXYKPLDLRAKKTRAMRKALTKH------------------EAKI 346
             Q  +  LR  YK K   PLDLR KKTRA+R+ LTKH                  +  +
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTFSMVAISQLSL 120

Query: 347 KTRKEIRKKSLFPPRVYAVKA 409
           KT +E +++  FP R YA+KA
Sbjct: 121 KTEREKKREKYFPMRKYAIKA 141


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 54.8 bits (126), Expect = 3e-08
 Identities = 39/106 (36%), Positives = 52/106 (49%)
 Frame = +2

Query: 29  VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 208
           VTV M ++K   LR ++               + LRVA+VTGG  +KLS I+V R A+  
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIKV-RTALRE 162

Query: 209 VYIVYHQXMKVXLRNHYKNKXYKPLDLRAKKTRAMRKALTKHEAKI 346
            Y               K K   PLDLR KKT A+R+ LTKH+  +
Sbjct: 163 AY-------------KKKKKSLLPLDLRPKKTCAIRRRLTKHQGML 195


>04_03_0024 - 9623178-9624001,9624502-9624678,9625144-9625305,
            9625520-9626032,9626801-9629153
          Length = 1342

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = +2

Query: 248  RNHYKN--KXYKPLDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVK 406
            RNH  N  K   PL  + +K   M+K++     +  T  E  K  +FPP  Y  K
Sbjct: 1048 RNHINNLAKLAGPLYAKLRKN-GMKKSMNYSGVEFFTFGEDNKLKVFPPNTYKFK 1101


>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 134 RVAKVTGGVASKLSKIRVVRKAIARVYIVYHQXMK 238
           R+AKV G V+ +++ +   R  I  VY+V    +K
Sbjct: 858 RIAKVLGVVSDQIAFVSAARPRIDEVYLVQGHILK 892


>04_04_0623 +
           26669284-26669421,26670906-26671564,26671948-26672140,
           26672220-26672284,26672399-26672609,26673284-26673515,
           26674463-26674521,26674651-26674680,26674761-26674850
          Length = 558

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -3

Query: 235 HXLVIHNVNTCDSFSYNTDLG 173
           H   +HN N CDS  Y  D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,331,535
Number of Sequences: 37544
Number of extensions: 116370
Number of successful extensions: 325
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)