Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a19
         (615 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       26   0.29 
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    24   1.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   3.6  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   3.6  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   3.6  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   3.6  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   8.2  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    21   8.2  

>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 25.8 bits (54), Expect = 0.29
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +2

Query: 356 CLDEKGDYRGACRGGTRRNSCGKEDRH 436
           C+D   D+   C+ G +  +C  +D H
Sbjct: 121 CVDRIADFECNCKNGWKGKTCSLKDSH 147


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +3

Query: 108 MKTFVTSKYAAVAGLA 155
           MKTFV   +AAV GLA
Sbjct: 1   MKTFVLVAFAAVLGLA 16


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/32 (31%), Positives = 12/32 (37%)
 Frame = -2

Query: 446 AFIDACLLYHSYCA*YHRGRHRDNPLFHPSTK 351
           AF+  C  Y  +CA Y       N L     K
Sbjct: 537 AFLGLCNFYRKFCARYSAATQDLNKLLRKGEK 568


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 265 HSLPTLPKIFVGKTINSITSWVVPHLALCLV 357
           H + TL   F GK   SIT  ++  +A  +V
Sbjct: 336 HQIGTLEVAFTGKNFFSITRGLILSIAGAIV 366


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 265 HSLPTLPKIFVGKTINSITSWVVPHLALCLV 357
           H + TL   F GK   SIT  ++  +A  +V
Sbjct: 371 HQIGTLEVAFTGKNFFSITRGLILSIAGAIV 401


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 265 HSLPTLPKIFVGKTINSITSWVVPHLALCLV 357
           H + TL   F GK   SIT  ++  +A  +V
Sbjct: 371 HQIGTLEVAFTGKNFFSITRGLILSIAGAIV 401


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -3

Query: 130 LLVTNVFMNMSW 95
           LL+TN+++++ W
Sbjct: 49  LLITNIWLSLEW 60


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = -3

Query: 130 LLVTNVFMNMSW 95
           LL+TN+++++ W
Sbjct: 49  LLITNIWLSLEW 60


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = +3

Query: 519 KDIEELKGWTD 551
           +D+E+LK W+D
Sbjct: 303 QDVEDLKRWSD 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,205
Number of Sequences: 336
Number of extensions: 3321
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15666150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)