Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a17
         (589 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    23   1.9  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    23   2.5  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    23   2.5  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -2

Query: 330 TITGKRVLKSILVNFLVFLETTAWTHIGLYL 238
           T+    + K+ILV+ +    T +WT I +++
Sbjct: 79  TVIDFSLCKAILVHAITIRSTFSWTFIDVFI 109


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 304 FQHAFACDRMWRHKRNMSRFKVITKFEGNVQATEKSSRSRPKDLTD 441
           + H  +CD+ W+   N++  K      GN  A + S    PK LT+
Sbjct: 32  YPHHTSCDKYWKCDNNVAELKTC----GNGLAFDASD---PKFLTE 70


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 304 FQHAFACDRMWRHKRNMSRFKVITKFEGNVQATEKSSRSRPKDLTD 441
           + H  +CD+ W+   N++  K      GN  A + S    PK LT+
Sbjct: 32  YPHHTSCDKYWKCDNNVAELKTC----GNGLAFDASD---PKFLTE 70


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,314
Number of Sequences: 336
Number of extensions: 3094
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14726181
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)