Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a17
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe...    39   5e-04
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    38   8e-04
SPAC9G1.05 |||actin cortical patch component Aip1 |Schizosacchar...    29   0.38 
SPBC713.05 |||WD repeat protein, human MAPK organizer 1 |Schizos...    28   1.2  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    28   1.2  
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa...    27   1.5  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    26   4.7  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    26   4.7  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   4.7  
SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyce...    25   6.2  
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc...    25   6.2  

>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
 Frame = +2

Query: 140 AAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRL 319
           AAV D++W+P    VF++C+ DG   ++D+  NK +   +  V +     +  + +NTR+
Sbjct: 292 AAVEDLQWSPSEKNVFSSCSCDGTFRIWDVR-NKQKTSAL-TVNAHPGVDVNVLSWNTRV 349

Query: 320 P-VIVCGDTKGTCHVLKL 370
           P ++  G   G   V  L
Sbjct: 350 PNLLATGADNGVWSVWDL 367



 Score = 25.4 bits (53), Expect = 6.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 140 AAVGDVKWAPYSSTVFAACTADGKVYVYDLNV 235
           A +  ++W P   +V     AD ++ ++DL+V
Sbjct: 388 APIYSIEWHPNEDSVIGVVGADNQISLWDLSV 419


>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
 Frame = +2

Query: 140 AAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRL 319
           A V DVKW       FA+  A G + ++DL  +   P+          K L +I +    
Sbjct: 464 AMVFDVKWCVSEPCCFASVDALGNLNLWDLQKDVEAPVTSDI---PDGKPLNKIAWQPEK 520

Query: 320 PVIVCGDTKGTCHVLK-LSPNL 382
             + CG   G  H+ K LSPNL
Sbjct: 521 RNLACGGLNGNVHIYKHLSPNL 542


>SPAC9G1.05 |||actin cortical patch component Aip1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 595

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = +2

Query: 146 VGDVKWAPYSSTVFAACTADGKVYVYD 226
           V DV+++P     FA+  ADGKVYV+D
Sbjct: 192 VYDVRYSPNDER-FASAGADGKVYVFD 217


>SPBC713.05 |||WD repeat protein, human MAPK organizer 1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 YSSTVFAACTADGKVYVYDLNVNK 241
           Y ST FA+C  D  + V+D+N  K
Sbjct: 66  YDSTKFASCGGDKFIQVWDVNTGK 89


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 AVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKY 244
           AV D+ W   +  V A C+ D  V+ +DL   ++
Sbjct: 324 AVTDMNWHRQNPDVLATCSIDSSVHCWDLRSPRF 357


>SPBC215.15 |sec13||COPII-coated vesicle component
           Sec13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 140 AAVGDVKWAPYSSTVFAAC-TADGKVYVYD 226
           A+V  V WAP+      AC ++DGKV V +
Sbjct: 100 ASVNAVSWAPHEYGALLACASSDGKVSVLE 129


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 254 CVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKG 349
           CVQ ++  K  +L      T LP IV G TKG
Sbjct: 192 CVQKLICPKQYRLPTEFLTTFLPGIVSGLTKG 223


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
 Frame = +2

Query: 101  SASKEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNK---YRPICVQAVV 271
            S  +EPLF+     +     W P++ +  ++ T D +     L  NK   Y+ +  Q  V
Sbjct: 1592 SVEREPLFLIAASGSPHAFIWNPHNVSASSSVTNDSESSKLSLIHNKPPIYQKVSEQQNV 1651

Query: 272  SKKTKKLTR 298
              K+  ++R
Sbjct: 1652 RPKSSGVSR 1660


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 146 VGDVKWAPYSSTVFAACTADGKVYVYDLN 232
           V  VKW P S +  A C  D  V ++DL+
Sbjct: 318 VNAVKWMPGSKSKLATCGDDCVVSLWDLD 346



 Score = 25.4 bits (53), Expect = 6.2
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 62  SQRNTTTTVI-MPASASKEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDL 229
           S  +TT TV  + A  SK  L   +    V DV +   S  VF +  ADG V ++DL
Sbjct: 185 SSLDTTCTVWDIVAQQSKTQLIAHD--KEVYDVAFLKDSINVFVSVGADGSVRMFDL 239


>SPBP4H10.19c |||calreticulin/calnexin homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 212 VYVYDLNVNKYRPICVQAVVSKK 280
           ++ +DLNV  Y+P  + +V S++
Sbjct: 14  IFAHDLNVKTYKPCTIPSVFSEQ 36


>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +2

Query: 155 VKWAPYSSTVFAACTADGKVYVYDL 229
           ++W+P+   + A+ + D +V ++DL
Sbjct: 331 LEWSPHDEPILASSSTDRRVCIWDL 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,443,832
Number of Sequences: 5004
Number of extensions: 50449
Number of successful extensions: 150
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)