Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8a17
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0207 - 1559491-1559544,1559806-1560161,1560244-1560363,156... 33 0.17
11_01_0204 - 1612505-1612636,1612809-1612926,1613050-1613162,161... 33 0.17
05_07_0181 - 28225396-28225587,28226009-28226068,28226150-282264... 30 1.6
01_06_0561 + 30251547-30252173,30252248-30252405,30253250-302541... 30 1.6
02_02_0241 - 8204430-8205398 29 2.1
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 29 2.7
02_05_0322 - 27926619-27927686 29 2.7
02_01_0260 - 1723476-1723502,1724051-1724148,1724276-1724339,172... 29 2.7
01_05_0511 - 22831889-22832523,22833743-22833835,22834018-228342... 29 2.7
11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377... 29 3.6
07_03_1312 - 25699811-25699912,25700410-25700548,25700655-257007... 29 3.6
12_01_0471 - 3672309-3672740,3673159-3673251,3673271-3673399,367... 28 4.8
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 28 4.8
01_06_0130 + 26783534-26783764,26784307-26784927 28 4.8
02_04_0044 - 19198001-19199236 28 6.3
02_01_0243 - 1601977-1602834,1602857-1603063 27 8.4
>12_01_0207 -
1559491-1559544,1559806-1560161,1560244-1560363,
1561523-1561568,1561741-1561858,1561981-1562093,
1562586-1562658,1562743-1562882,1563005-1563075,
1563228-1563396,1563594-1563659,1564052-1564150,
1564271-1564444,1564720-1564798,1564901-1565007,
1565391-1565435
Length = 609
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 161 WAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQA 265
W+P + +FA+C+AD + ++D+ K I V+A
Sbjct: 271 WSPTEADIFASCSADRTISIWDIRTGKKPCISVRA 305
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +2
Query: 146 VGDVKWAPYSSTVFAACTADGKVYVYDLNVNK 241
+ V+W+P+ + A +AD ++ ++DL++ K
Sbjct: 356 ITSVEWSPHEPSTLAVSSADHQLTIWDLSLEK 387
>11_01_0204 -
1612505-1612636,1612809-1612926,1613050-1613162,
1613640-1613712,1613797-1613936,1614059-1614129,
1614262-1614430,1614625-1614690,1615081-1615179,
1615298-1615471,1615745-1615823,1615929-1616035,
1616395-1616439
Length = 461
Score = 33.1 bits (72), Expect = 0.17
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 161 WAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQA 265
W+P + +FA+C+AD + ++D+ K I V+A
Sbjct: 271 WSPTEADIFASCSADRTISIWDIRTGKKPCISVRA 305
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +2
Query: 146 VGDVKWAPYSSTVFAACTADGKVYVYDLNVNK 241
+ V+W+P+ + A +AD ++ ++DL++ K
Sbjct: 356 ITSVEWSPHEPSTLAVSSADHQLTIWDLSLEK 387
>05_07_0181 -
28225396-28225587,28226009-28226068,28226150-28226416,
28227167-28227232,28228164-28228963,28229565-28229673,
28230391-28232097
Length = 1066
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 161 WAPYSSTVFAACTADGKVYVYDLNVNKYRPIC 256
++PYSS + A +AD K+Y YDL N P C
Sbjct: 895 FSPYSSRMLAFGSADYKIYCYDLR-NTRIPWC 925
>01_06_0561 +
30251547-30252173,30252248-30252405,30253250-30254192,
30254271-30254438,30254546-30254857,30255498-30255557,
30255905-30255937,30256083-30256271
Length = 829
Score = 29.9 bits (64), Expect = 1.6
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = +2
Query: 140 AAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNT 313
A V V++ P S+ A +AD K+Y YDL N P C +K + +D +T
Sbjct: 643 ANVCSVQFQPDSARSIAIGSADHKIYCYDLR-NIRAPYCTLVGHTKTVSYVKYVDAST 699
>02_02_0241 - 8204430-8205398
Length = 322
Score = 29.5 bits (63), Expect = 2.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 116 PLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVYDL 229
P+F F A+ D W+ ++ AA + DG V ++D+
Sbjct: 58 PVFAFPTSDALFDCAWSESHESLCAAASGDGSVRLFDV 95
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/59 (23%), Positives = 27/59 (45%)
Frame = +2
Query: 173 SSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLPVIVCGDTKG 349
SS F T K++V+ + ++P ++ + TK L + F+ ++ GD G
Sbjct: 169 SSGEFLGITNKRKLHVWRIPTKNFKPDKIRKIKLSHTKNLNTLAFHPSERIVASGDATG 227
>02_05_0322 - 27926619-27927686
Length = 355
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 143 AVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPI 253
AV D+ W + +FA+ +ADG V V+DL ++ I
Sbjct: 188 AVHDIAWG--ENGIFASVSADGSVRVFDLRDKEHSTI 222
>02_01_0260 -
1723476-1723502,1724051-1724148,1724276-1724339,
1724458-1724563,1724641-1724677,1724763-1724856,
1725452-1725568,1726450-1726714,1727329-1727396,
1727478-1727642
Length = 346
Score = 29.1 bits (62), Expect = 2.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 155 VKWAPYSSTVFAACTADGKVYVYDLNVNK 241
+ W P++ + ACT + K+ V++ NK
Sbjct: 310 MSWCPHNPNLLLACTKNNKILVWNKKTNK 338
>01_05_0511 -
22831889-22832523,22833743-22833835,22834018-22834215,
22834365-22834494,22834596-22834714,22835244-22835487,
22835607-22835807
Length = 539
Score = 29.1 bits (62), Expect = 2.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = +2
Query: 71 NTTTTVIMPASASKEPLFMFELGAAVGDVKWAPYSSTVFAACTADG 208
++ TTV+ P S F E AV DV PYSS C+ G
Sbjct: 247 SSKTTVLYPESGGNLHCFTAETACAVLDVMGPPYSSVEGRDCSYYG 292
>11_01_0488 +
3770410-3770774,3771197-3771284,3771383-3771466,
3772128-3772224,3772324-3772411,3772800-3772848,
3773044-3773238,3773713-3774159
Length = 470
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/75 (22%), Positives = 29/75 (38%)
Frame = +2
Query: 155 VKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLPVIVC 334
V W P F ADG ++VYD + + V + K++ + PV
Sbjct: 127 VAWVPGHEGFFVVSNADGNLFVYDKSKDVNTDWTFPTVEDQSEMKISYAKSSKSNPVARW 186
Query: 335 GDTKGTCHVLKLSPN 379
+G + + SP+
Sbjct: 187 HICQGAINAISFSPD 201
>07_03_1312 -
25699811-25699912,25700410-25700548,25700655-25700722,
25700803-25700895,25706303-25706902
Length = 333
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 74 TTTTVIMPASASKEPLFMFELGAAVGDVKWAPYSSTVFAA 193
TT V +PA+ + PL + A +WAPY + AA
Sbjct: 54 TTVHVWVPANPPRNPLLLLHGFGASATWQWAPYLRPLIAA 93
>12_01_0471 -
3672309-3672740,3673159-3673251,3673271-3673399,
3673400-3673448,3674291-3674378,3674477-3674573,
3675195-3675278,3675377-3675464,3676589-3676715,
3676774-3676848,3676934-3677042,3677125-3677448,
3677863-3678039
Length = 623
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 155 VKWAPYSSTVFAACTADGKVYVYD 226
V W P +F +DG +YVYD
Sbjct: 276 VAWVPEREGIFVVSHSDGNLYVYD 299
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 28.3 bits (60), Expect = 4.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 137 GAAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRP 250
G V W P+SS+ F T+D ++DL+ + +P
Sbjct: 215 GIKVLQTSWHPFSSSHFGVLTSDAVFRLFDLSFDLEQP 252
>01_06_0130 + 26783534-26783764,26784307-26784927
Length = 283
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -2
Query: 162 HFTSPTAAPSSNINNGSLEADAGIITVVVVFLCDGWHIHPFTGSHSTFYL 13
H ++P AAPSS+ +L D V +F+ D W HS+ Y+
Sbjct: 93 HASAPAAAPSSSSAAAAL-LDVAARFGVAMFVLDAWQYFAHRLMHSSRYM 141
>02_04_0044 - 19198001-19199236
Length = 411
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 146 VGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQA 265
V D+ W + VFA+ +ADG V V+DL ++ I ++
Sbjct: 216 VYDIAWG--GAGVFASVSADGSVRVFDLRDKEHSTIIYES 253
>02_01_0243 - 1601977-1602834,1602857-1603063
Length = 354
Score = 27.5 bits (58), Expect = 8.4
Identities = 16/58 (27%), Positives = 25/58 (43%)
Frame = +2
Query: 50 MCHPSQRNTTTTVIMPASASKEPLFMFELGAAVGDVKWAPYSSTVFAACTADGKVYVY 223
+C +R TTT + A + + PL + D +PYS + TA +V Y
Sbjct: 24 VCRSWRRITTTAYFVAAHSRRRPLQLLGYTGLAVDSSSSPYSYVFTPSATATTRVAGY 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,802,031
Number of Sequences: 37544
Number of extensions: 328475
Number of successful extensions: 835
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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