Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8a17
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,... 43 1e-04
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 37 0.009
Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical pr... 34 0.086
Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z81097-20|CAB03178.1| 417|Caenorhabditis elegans Hypothetical p... 29 1.9
AL023833-1|CAA19477.1| 417|Caenorhabditis elegans Hypothetical ... 29 1.9
AF116530-1|AAD05571.1| 417|Caenorhabditis elegans synthetic mul... 29 1.9
Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical pr... 28 4.3
AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein. 28 4.3
Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 28 5.7
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 28 5.7
Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical pr... 27 7.5
U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical p... 27 7.5
AL161712-2|CAC70128.1| 313|Caenorhabditis elegans Hypothetical ... 27 7.5
Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical p... 27 9.9
DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagella... 27 9.9
>AF045642-2|AAC02580.1| 643|Caenorhabditis elegans Dynein chain,
light intermediateprotein 1 protein.
Length = 643
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/81 (27%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +2
Query: 152 DVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPIC-VQAVVSKKTKKLTRIDFNTRLPVI 328
DV W+P VFA+ ADG ++V++LN + P+ ++A ++ + R+ ++ +
Sbjct: 536 DVAWSPVHPAVFASIDADGNIFVWNLNEDVEGPVARLRAGAEGESVYMNRLIWSPDGKHV 595
Query: 329 VCGDTKGTCHVLKLSPNLRVM 391
GD +G H+ + +L V+
Sbjct: 596 FVGDDEGRVHMYDVRESLYVL 616
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 37.1 bits (82), Expect = 0.009
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +2
Query: 143 AVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLP 322
+V D+ W+P + + A+C+ADG + ++D + + CV V + I +N
Sbjct: 277 SVEDLAWSPTETGLLASCSADGSIKLWDTR-SAPKDACVCTVQKAHESDVNVISWNRHEN 335
Query: 323 VIVCGDTKGTCHVLKL 370
+IV G G + L
Sbjct: 336 LIVSGGDDGELKIWSL 351
>Z68314-7|CAA92662.2| 872|Caenorhabditis elegans Hypothetical
protein F07H5.8 protein.
Length = 872
Score = 33.9 bits (74), Expect = 0.086
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +2
Query: 191 ACTAD-GKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRLPVIVC 334
+CTA K Y D+ + +P CVQA VS K+ R T P C
Sbjct: 187 SCTAQPNKSYCIDMCIKSCQPTCVQAAVSINVKEFMRTSTTTLAPSRSC 235
>Z72502-4|CAA96589.1| 750|Caenorhabditis elegans Hypothetical
protein C08B6.7 protein.
Length = 750
Score = 30.3 bits (65), Expect = 1.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 155 VKWAPYSSTVFAACTADGKVYVYDLNVN 238
++W P S +F A G +YVYD ++
Sbjct: 232 IRWLPGDSNIFLASYVSGNLYVYDQRIS 259
>Z81097-20|CAB03178.1| 417|Caenorhabditis elegans Hypothetical
protein K07A1.12 protein.
Length = 417
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 155 VKWAPYSSTVFAACTADGKVYVYDLN 232
V+W+P++ T+ A+ D +++V+DL+
Sbjct: 315 VQWSPHNETILASSGTDKRLHVWDLS 340
>AL023833-1|CAA19477.1| 417|Caenorhabditis elegans Hypothetical
protein K07A1.12 protein.
Length = 417
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 155 VKWAPYSSTVFAACTADGKVYVYDLN 232
V+W+P++ T+ A+ D +++V+DL+
Sbjct: 315 VQWSPHNETILASSGTDKRLHVWDLS 340
>AF116530-1|AAD05571.1| 417|Caenorhabditis elegans synthetic
multivulva protein LIN-53 p48 protein.
Length = 417
Score = 29.5 bits (63), Expect = 1.9
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +2
Query: 155 VKWAPYSSTVFAACTADGKVYVYDLN 232
V+W+P++ T+ A+ D +++V+DL+
Sbjct: 315 VQWSPHNETILASSGTDKRLHVWDLS 340
>Z82075-3|CAB04929.2| 784|Caenorhabditis elegans Hypothetical
protein W07A8.3 protein.
Length = 784
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 207 PSAVQAANTVLEYGAHFTSPTAAPSSNINNGSLEAD 100
PS A + +L G ++P APS++ NN S A+
Sbjct: 495 PSPATAIDDLLGLGTETSAPAPAPSTHFNNSSSGAN 530
>AF293972-1|AAG02478.1| 784|Caenorhabditis elegans auxilin protein.
Length = 784
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 207 PSAVQAANTVLEYGAHFTSPTAAPSSNINNGSLEAD 100
PS A + +L G ++P APS++ NN S A+
Sbjct: 495 PSPATAIDDLLGLGTETSAPAPAPSTHFNNSSSGAN 530
>Z79756-4|CAB02116.2| 478|Caenorhabditis elegans Hypothetical
protein F53C11.7 protein.
Length = 478
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Frame = +2
Query: 140 AAVGDVKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAVVSKKTKKLTRIDFNTRL 319
A + + WAP+S + D + ++D++ +PI + + ++ +I +++
Sbjct: 403 ATINGLSWAPHSGSHICTAGDDYQALIWDVH-EMPKPINDPILAYRAQAEVNQIHWSSSF 461
Query: 320 P--VIVCGDTK 346
P + +C D K
Sbjct: 462 PDWISICSDNK 472
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 341 TKGTCHVLKLSPNLRVMCKPPKKAQGVDQRTL 436
TK ++ +PN R++ KPP + D+RTL
Sbjct: 815 TKLVADFIRNAPNNRILNKPPPRVNYRDERTL 846
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Frame = +2
Query: 245 RPICVQAVVSKKTKKLTRI--DFNTRLPVIVCGDTKGTCHVLKLSPNLRVMCKPPKKAQG 418
RPI + KK K+ + + + LPV GTC L ++P C G
Sbjct: 1394 RPILSSLKIEKKASKIENVIVEHHAVLPVSPAPGKLGTCPKLLINPGCTEQCSQDSDCHG 1453
>Z81117-7|CAB03315.2| 329|Caenorhabditis elegans Hypothetical
protein T06E6.6 protein.
Length = 329
Score = 27.5 bits (58), Expect = 7.5
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 289 VDKNRFQHAFACDRMWRHKR 348
V +NR+ H FA ++ WRH R
Sbjct: 108 VVENRYYHLFAKEKAWRHFR 127
>Z75525-2|CAA99763.1| 1390|Caenorhabditis elegans Hypothetical
protein C03D6.4 protein.
Length = 1390
Score = 27.5 bits (58), Expect = 7.5
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +2
Query: 155 VKWAPYSSTVFAACTADGKVYVYDLNVNKYRPICVQAV-VSKKTKKLTRIDFNTRLPVIV 331
++W P FAA + D + V +NV P + V + K T I ++ + +
Sbjct: 161 LEWNPAFPDTFAASSTDRSILVAKINVQS--PANQKLVGIGKFGAVTTAISWSPKGKQLT 218
Query: 332 CGDTKGTCHVLKLSPNLRVM 391
GD+ G +++L P L V+
Sbjct: 219 IGDSLG--KIVQLKPELEVV 236
>U50301-10|AAV28351.1| 513|Caenorhabditis elegans Hypothetical
protein F20D6.12 protein.
Length = 513
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 458 TYPIS*SVRSFGRLLELFSVACTLPSNLVITL 363
TY + S+R++ + +FS CTLP LV+ +
Sbjct: 432 TYFDNSSIRAYFIFITMFSFICTLPGGLVMLI 463
>AL161712-2|CAC70128.1| 313|Caenorhabditis elegans Hypothetical
protein Y66D12A.3 protein.
Length = 313
Score = 27.5 bits (58), Expect = 7.5
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +1
Query: 223 RFEREQVQAYMRPSCCLQKD*EVDKNRFQHAFACDRMWRHKRNMSRFKVITKFEGNVQAT 402
+F+ E V +R + Q+ E+D + ++WR+ +R ++ TKF+ +V
Sbjct: 194 QFQNEPVDIIIRSASSFQR--EIDFHFLNCLLTRKKLWRYDYFRTRGQISTKFQESVGVD 251
Query: 403 EKSSR 417
E +R
Sbjct: 252 ELWNR 256
>Z82266-11|CAB05177.4| 1192|Caenorhabditis elegans Hypothetical
protein F23B2.4 protein.
Length = 1192
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 131 ELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLN 232
E G + D+ + P S + A AD KVY++D+N
Sbjct: 17 EAGVCIYDLAFKPDGSELLLA--ADNKVYLFDVN 48
>DQ360810-1|ABC88647.1| 1192|Caenorhabditis elegans intraflagellar
transport protein protein.
Length = 1192
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 131 ELGAAVGDVKWAPYSSTVFAACTADGKVYVYDLN 232
E G + D+ + P S + A AD KVY++D+N
Sbjct: 17 EAGVCIYDLAFKPDGSELLLA--ADNKVYLFDVN 48
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,648,134
Number of Sequences: 27780
Number of extensions: 288552
Number of successful extensions: 834
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 834
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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