Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a17
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    24   0.96 
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    24   0.96 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    24   0.96 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   0.96 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.1  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.1  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    22   5.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   6.8  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    21   9.0  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 428 RTLQIMKLDKLLSLVR 475
           R L+I++L KLLSLVR
Sbjct: 203 RALRILRLAKLLSLVR 218


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 428 RTLQIMKLDKLLSLVR 475
           R L+I++L KLLSLVR
Sbjct: 203 RALRILRLAKLLSLVR 218


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 11/16 (68%), Positives = 14/16 (87%)
 Frame = +2

Query: 428 RTLQIMKLDKLLSLVR 475
           R L+I++L KLLSLVR
Sbjct: 203 RALRILRLAKLLSLVR 218


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 0.96
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +1

Query: 289 VDKNRFQHAFACDRMWRHKRNMSRFKVITK 378
           +  N   + + C+  WR   NM RF+ + K
Sbjct: 369 IHDNICSNGWICEHRWRQIYNMVRFRNLVK 398


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 78  VVFLCDGW 55
           +VF CDGW
Sbjct: 607 IVFACDGW 614


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -2

Query: 78  VVFLCDGW 55
           +VF CDGW
Sbjct: 645 IVFACDGW 652


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -1

Query: 61  WVAHTPFHRFTLNLLLSNEK 2
           W  H P  R  ++++  NEK
Sbjct: 331 WNEHQPLQRQNMDMVAQNEK 350


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = +1

Query: 310 HAFACDRMW 336
           HA +CDR+W
Sbjct: 134 HADSCDRLW 142


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 245 RPICVQAVVSKKTKKLTR 298
           RP+    +V K+TKK  R
Sbjct: 4   RPVYRPTIVKKRTKKFIR 21


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,035
Number of Sequences: 438
Number of extensions: 3545
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)