Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a16
         (563 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384...    48   7e-06
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743...    44   8e-05
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508...    43   2e-04
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758...    42   4e-04
04_04_1531 - 34184899-34185030,34185130-34185240,34185344-341854...    30   1.1  

>01_01_0524 -
           3845637-3845727,3845803-3845896,3846415-3846497,
           3846587-3846737,3847113-3847217,3847351-3847420,
           3847551-3847587,3848155-3848257,3848441-3848480
          Length = 257

 Score = 47.6 bits (108), Expect = 7e-06
 Identities = 26/79 (32%), Positives = 41/79 (51%)
 Frame = +3

Query: 327 TSITINFNKMSKLGALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVK 506
           +S+     K  + G  H+ +  GA + AT+++ HG G  GA    W +L+ E    P++K
Sbjct: 8   SSVASGGGKRLEYGRTHVVRPKGAHK-ATIVWLHGLGDNGAS---WSQLL-ETLPLPNIK 62

Query: 507 VLFPTAPLQPYTPAGGMMS 563
            + PTAP +P    GG  S
Sbjct: 63  WICPTAPTRPVAVFGGFPS 81


>05_07_0299 -
           29073900-29073984,29074125-29074158,29074269-29074351,
           29074457-29074607,29074853-29074957,29075099-29075168,
           29075374-29075410,29076732-29076843,29076956-29076983
          Length = 234

 Score = 44.0 bits (99), Expect = 8e-05
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = +3

Query: 366 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 545
           G  ++ +  G  Q AT+++ HG G  GA    W +L+ +  S P++K + PTA  QP T 
Sbjct: 20  GRTYVVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLSLPNIKWICPTAATQPVTA 74

Query: 546 AGG 554
            GG
Sbjct: 75  FGG 77


>04_01_0383 +
           5085697-5085724,5085816-5085927,5087249-5087285,
           5087512-5087581,5087704-5087808,5088022-5088172,
           5088257-5088339,5089152-5089372,5089465-5089501,
           5089668-5089753
          Length = 309

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 23/63 (36%), Positives = 35/63 (55%)
 Frame = +3

Query: 366 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 545
           G  +I +  G  Q AT+++ HG G  GA    W +L+ +  S P++K + PTA  +P T 
Sbjct: 20  GRTYIVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLSLPNIKWICPTAATRPVTA 74

Query: 546 AGG 554
            GG
Sbjct: 75  FGG 77


>01_05_0685 +
           24273331-24273569,24275429-24275465,24275739-24275808,
           24275978-24276082,24276205-24276355,24276454-24276536,
           24276619-24276712,24276796-24276883
          Length = 288

 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +3

Query: 366 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 545
           G  ++ +  G  Q AT+++ HG G  GA    W +L+ +    P++K + PTAP +P   
Sbjct: 53  GRTYVVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLPLPNIKWICPTAPTRPVAA 107

Query: 546 AGG 554
            GG
Sbjct: 108 FGG 110


>04_04_1531 -
           34184899-34185030,34185130-34185240,34185344-34185465,
           34185541-34185664,34185815-34185867,34185984-34186146
          Length = 234

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +3

Query: 414 VIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGG 554
           V++ HGSG TG + +  V           V+  FPTAP       GG
Sbjct: 10  VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGG 56


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,986,133
Number of Sequences: 37544
Number of extensions: 243262
Number of successful extensions: 445
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)