Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a16
         (563 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular l...    28   5.3  
AF101319-1|AAC69354.2|  334|Caenorhabditis elegans Hypothetical ...    28   5.3  
AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine r...    28   5.3  
AC024205-4|AAF36044.1|  311|Caenorhabditis elegans Hypothetical ...    27   9.3  

>U41274-2|AAD50512.1|  347|Caenorhabditis elegans Intracellular
           lectin protein 2 protein.
          Length = 347

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 19/67 (28%), Positives = 32/67 (47%)
 Frame = +3

Query: 246 YNLIKYDQKKELSIPNYI**IRTYLPETSITINFNKMSKLGALHITKHSGAKQTATVIFF 425
           ++LIK        IPN+     T++    I +  ++ SK GAL  T+   ++     + F
Sbjct: 49  HSLIKPYTGSGADIPNWNIIGSTFVSSNQIRLTADEQSKAGALWNTQPVWSRDWELQVSF 108

Query: 426 HGSGSTG 446
             +GSTG
Sbjct: 109 KVTGSTG 115


>AF101319-1|AAC69354.2|  334|Caenorhabditis elegans Hypothetical
           protein K08D9.4 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +3

Query: 351 KMSKLGALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPL 530
           ++  L A++    S      TVI FHG+  +  D K +VR  +E  +   + + +P    
Sbjct: 54  RLVDLNAVYEDSLSSGSPLGTVIGFHGTPGSHRDFK-YVRQRLEHMNIRFIGINYPGFKQ 112

Query: 531 QPYTP 545
            P  P
Sbjct: 113 TPAYP 117


>AF068713-11|AAC17792.1|  315|Caenorhabditis elegans Serpentine
           receptor, class i protein21 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 101 SYFLSFIVYQTIKVRRFSRNLSFYI-VINFDEIG*VIGSHYTRFI 232
           S F++ I+Y T+++    +NL  ++  +NF +    +GS   +F+
Sbjct: 203 SIFIAIIIYSTVRMINILKNLEKHVSAVNFKKHKAAVGSLIAQFL 247


>AC024205-4|AAF36044.1|  311|Caenorhabditis elegans Hypothetical
           protein Y73C8B.1 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = +3

Query: 351 KMSKLGALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPL 530
           ++  L A++    +      TVI FHG+  +  D K +VR  +E  +   + + +P    
Sbjct: 31  RLVDLNAVYEDTSASGSPLGTVIGFHGTPGSHKDFK-YVRQRLEHMNIRFIGINYPGFKQ 89

Query: 531 QPYTP 545
            P  P
Sbjct: 90  TPAYP 94


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,074,502
Number of Sequences: 27780
Number of extensions: 242998
Number of successful extensions: 497
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)