Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a05
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   202   1e-52
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   200   6e-52
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    27   6.0  
12_01_0203 + 1520079-1520302,1522346-1522405,1522794-1523016,152...    27   7.9  
04_01_0377 - 4970034-4970687                                           27   7.9  
03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    27   7.9  
03_02_0480 + 8785130-8785192,8785472-8785518,8786415-8786508,878...    27   7.9  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  202 bits (493), Expect = 1e-52
 Identities = 95/148 (64%), Positives = 115/148 (77%), Gaps = 2/148 (1%)
 Frame = +2

Query: 41  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
           MK N++ P TGCQK  E+ D+ KLR FY+KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
           FPMKQGVLT+ RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGD 120

Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFN 478
            ++PGLTD   PR  GPKRASKIRKLFN
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFN 148


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  200 bits (487), Expect = 6e-52
 Identities = 94/148 (63%), Positives = 114/148 (77%), Gaps = 2/148 (1%)
 Frame = +2

Query: 41  MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 220
           MK N++ P TGCQK  E+ D+ KLR F++KR+  EV  D LG+E+KGYV ++ GG DKQG
Sbjct: 1   MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 221 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVRGCIVDANLSVLALVIVRKGA 394
           FPMKQGVLT  RVRLL+ +G  C+R   RRDGER+RKSVRGCIV  +LSV+ LVIV+KG 
Sbjct: 61  FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGE 120

Query: 395 QEIPGLTDGNVPRRLGPKRASKIRKLFN 478
            ++PGLTD   PR  GPKRASKIRKLFN
Sbjct: 121 NDLPGLTDTEKPRMRGPKRASKIRKLFN 148


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 77  QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 166
           +KL+ E+ DE KLRI YEK+       D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524


>12_01_0203 +
           1520079-1520302,1522346-1522405,1522794-1523016,
           1523038-1523434,1523522-1523781,1523866-1524011,
           1524044-1524317,1524501-1525547
          Length = 876

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 5   FHG*RSTGLTAVMKLNVSYPATGCQKLFEVVDEHKLR 115
           FHG RSTG++++   N+ + A     L +  + HK R
Sbjct: 447 FHGERSTGVSSLAPGNIRHLALQVNSLEQCQELHKYR 483


>04_01_0377 - 4970034-4970687
          Length = 217

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 328 SSWMYC*RQSLGLGSCYCAQGCPGNSWID*WKCTPPSRSQTCFQN 462
           S W YC     GLGS +C  GC   +     +C   +    C  N
Sbjct: 123 SQWGYC-----GLGSEFCGNGCQSGACCPEKRCGKQAGGDKCPNN 162


>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 130 LFVKDTKLVLVHHFEQLLASRCRVRNV*LHDCGQS 26
           LF+  T  V +  F+ L   RC V +  LH C Q+
Sbjct: 76  LFLDKTMDVALDSFDNLFCRRCLVFDCRLHGCSQN 110


>03_02_0480 +
           8785130-8785192,8785472-8785518,8786415-8786508,
           8786598-8786699,8786988-8787259,8787343-8787420,
           8787648-8787894
          Length = 300

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/39 (28%), Positives = 15/39 (38%)
 Frame = -1

Query: 362 PRDWRQQYIHELIYVFSLHRGAVCNMSGPLTSEDEHGCL 246
           PR W+        Y    HRGA       +  E +HG +
Sbjct: 204 PRKWKTNKGQVFFYCLKRHRGASKKQGASMVEEVDHGTM 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,891,799
Number of Sequences: 37544
Number of extensions: 336190
Number of successful extensions: 1005
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)