Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a04
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    45   9e-06
SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr ...    27   1.9  
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch...    27   2.5  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   3.2  
SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    25   5.7  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   9.9  

>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 44.8 bits (101), Expect = 9e-06
 Identities = 21/51 (41%), Positives = 31/51 (60%)
 Frame = +3

Query: 396 IAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISL 548
           + G FV  AL ++C  I  HL+ Y  P  QR +VRIL ++ IY   S++S+
Sbjct: 8   LCGFFVAIALVLSCISIITHLKNYKKPVLQRSVVRILMMIVIYSSVSFLSV 58


>SPAC227.17c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 272 NSQNEYHRYGEYNR 313
           +  N Y+RYGEYNR
Sbjct: 51  SQMNHYYRYGEYNR 64


>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 478 DGFVYQRKCWYICWQVMNRAVNTNIPAMTCAL-RVCRNM 365
           DG+  Q +C  I + V +R    N+P     L RVC N+
Sbjct: 76  DGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVRVCENI 114


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 424 YSLLANRYTSICVGTQTHQSNVGSCESYLSSQYTAVTAGYLCSS 555
           Y L  N++  + V   T  +NVG  +     Q++  T GY+C S
Sbjct: 120 YELATNQWPDLMV---TLVANVGEGQPSALKQHSLQTIGYICES 160


>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 22/105 (20%), Positives = 47/105 (44%)
 Frame = +3

Query: 237  QKENSVITIYNQILRMSTTDTVNITAQRISEIVHDVLKPLQEPIFLQTRSAQVIAGIFVF 416
            + +N + + Y  +L +++T T+N    +       + +  ++   + +R+A +IA  F+ 
Sbjct: 1118 ETQNKMFSAY--MLTVASTSTMNGLQPKFIYF-RSIYEQYEQNTAIYSRTAFIIA-FFLV 1173

Query: 417  TALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLL 551
             A+   C        WY  PS           +P YG ++W+ L+
Sbjct: 1174 EAVINCCFATLFFFGWYY-PSG---FYEFNHNIPFYGGFAWLMLM 1214


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +3

Query: 240 KENSVITIYNQILRMSTTDTV-NITAQRISEIVHD--VLKPLQEPIFLQTRSAQVIAGI 407
           K++ + T+YNQI+  + TD +  +T  ++  + +   +L  ++E    + R   +I G+
Sbjct: 201 KDSPLETLYNQIINYAETDEIRRLTESKLLHMYNKLLILSEIKEKSHWRERIWDLIQGM 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,344,105
Number of Sequences: 5004
Number of extensions: 48882
Number of successful extensions: 127
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)