Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a04
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0019 + 16500877-16501029,16501184-16501240,16501560-165016...    60   1e-09
06_03_1475 - 30391555-30391890,30391982-30392233,30392358-303926...    55   4e-08
04_04_0803 - 28165828-28166136,28166257-28166505,28166628-281668...    52   3e-07
02_05_0259 - 27226378-27226398,27226643-27226813,27227063-272272...    49   3e-06
03_06_0530 - 34545699-34546013,34546121-34546354,34547006-345470...    46   2e-05
05_06_0083 + 25429958-25429967,25431035-25431144,25431286-254313...    45   5e-05
07_03_0529 - 19107949-19108152,19108857-19109147,19109817-191099...    40   0.001

>03_04_0019 +
           16500877-16501029,16501184-16501240,16501560-16501668,
           16501837-16502021,16502103-16502182,16502869-16503085,
           16503394-16503633,16503720-16504028
          Length = 449

 Score = 60.1 bits (139), Expect = 1e-09
 Identities = 26/55 (47%), Positives = 36/55 (65%)
 Frame = +3

Query: 384 SAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISL 548
           S  ++   FV  AL ++   I QHLR Y+NP EQ+WI+ +LF+VP+Y   S ISL
Sbjct: 20  SVVLVGAAFVLVALLVSLWLILQHLRSYSNPEEQKWIIAVLFMVPVYASESIISL 74


>06_03_1475 -
           30391555-30391890,30391982-30392233,30392358-30392619,
           30393232-30393320,30393408-30393592,30393673-30393781,
           30393886-30393942,30394047-30394196
          Length = 479

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 27/77 (35%), Positives = 47/77 (61%)
 Frame = +3

Query: 321 ISEIVHDVLKPLQEPIFLQTRSAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVR 500
           ++E ++ V +    PI+     A + AGIFV T+L ++   ++ HL  Y NP EQ+++V 
Sbjct: 3   LAEQLYSVFRSYAPPIW-----ASITAGIFVITSLSLSLFLLFNHLSAYKNPEEQKFLVG 57

Query: 501 ILFIVPIYGCYSWISLL 551
           ++ +VP Y   S+ISL+
Sbjct: 58  VILMVPCYAVESYISLV 74


>04_04_0803 -
           28165828-28166136,28166257-28166505,28166628-28166889,
           28168116-28168204,28168286-28168342,28168443-28168595
          Length = 372

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 20/55 (36%), Positives = 37/55 (67%)
 Frame = +3

Query: 387 AQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLL 551
           A ++AG FV  +L ++   I++HL  Y NP EQ++++ ++ +VP Y   S++SL+
Sbjct: 21  ATLVAGFFVLLSLSLSIYLIFEHLSAYNNPEEQKFVLGVILMVPCYAIESYVSLI 75


>02_05_0259 -
           27226378-27226398,27226643-27226813,27227063-27227284,
           27227508-27227668,27227933-27227996,27228002-27228194,
           27228499-27228587,27228668-27228852,27229671-27229779,
           27229880-27229936,27230023-27230175
          Length = 474

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 19/55 (34%), Positives = 37/55 (67%)
 Frame = +3

Query: 387 AQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLL 551
           A +I+G F+  ++ ++   I+QHL  Y NP EQ++++ ++ +VP Y   S++SL+
Sbjct: 21  AILISGFFMLLSVSLSMYLIFQHLSAYNNPEEQKFVLGVILMVPCYAVESYVSLV 75


>03_06_0530 -
           34545699-34546013,34546121-34546354,34547006-34547078,
           34548226-34548299,34548852-34549004
          Length = 282

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = +3

Query: 420 ALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLL 551
           A  I    IY+HL  Y  P  QR+IVR++F+VP+Y   S++SL+
Sbjct: 19  ATVIALVHIYRHLLHYAEPIYQRFIVRLIFMVPVYAVMSFLSLI 62


>05_06_0083 +
           25429958-25429967,25431035-25431144,25431286-25431342,
           25431828-25431936,25432329-25432513,25432595-25432683,
           25432877-25433132,25433623-25433865,25433955-25434266
          Length = 456

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 20/53 (37%), Positives = 34/53 (64%)
 Frame = +3

Query: 393 VIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLL 551
           V AGI V  +L ++   I++HL  Y  P EQ++++ ++ +VP+Y   S+ SLL
Sbjct: 12  VSAGISVTASLVLSLFLIFEHLCAYHQPEEQKFLIGLILMVPVYAVQSFFSLL 64


>07_03_0529 -
           19107949-19108152,19108857-19109147,19109817-19109939,
           19110019-19110306
          Length = 301

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 18/51 (35%), Positives = 30/51 (58%)
 Frame = +3

Query: 399 AGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISLL 551
           A   V  ++  T Q + QHL ++ NP EQ+ I+ I+ + P+Y   S++ LL
Sbjct: 24  AACCVMLSMHFTVQLVSQHLFYWKNPKEQKAILIIVLMAPLYAINSFVGLL 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,900,364
Number of Sequences: 37544
Number of extensions: 270365
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)