Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a04
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical pr...    87   6e-18
Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical pr...    87   6e-18
U53341-2|AAC69108.2|  645|Caenorhabditis elegans Hypothetical pr...    29   3.0  
Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical pr...    28   5.2  
U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein ...    28   5.2  
AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine re...    27   9.1  

>Z69792-6|CAA93669.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 39/62 (62%), Positives = 50/62 (80%)
 Frame = +3

Query: 369 FLQTRSAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISL 548
           F+++ SAQ +AG+  + AL IT  QIYQHLR+Y+ P+EQRWIVRILFIVPIY   SW+SL
Sbjct: 11  FIRSASAQGLAGLCTWAALLITSHQIYQHLRFYSCPAEQRWIVRILFIVPIYAFDSWLSL 70

Query: 549 LF 554
           +F
Sbjct: 71  IF 72


>Z69790-5|CAA93657.2|  398|Caenorhabditis elegans Hypothetical
           protein F40E10.6 protein.
          Length = 398

 Score = 87.4 bits (207), Expect = 6e-18
 Identities = 39/62 (62%), Positives = 50/62 (80%)
 Frame = +3

Query: 369 FLQTRSAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQRWIVRILFIVPIYGCYSWISL 548
           F+++ SAQ +AG+  + AL IT  QIYQHLR+Y+ P+EQRWIVRILFIVPIY   SW+SL
Sbjct: 11  FIRSASAQGLAGLCTWAALLITSHQIYQHLRFYSCPAEQRWIVRILFIVPIYAFDSWLSL 70

Query: 549 LF 554
           +F
Sbjct: 71  IF 72


>U53341-2|AAC69108.2|  645|Caenorhabditis elegans Hypothetical
           protein F49E10.4a protein.
          Length = 645

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = +3

Query: 315 QRISEIVHDVLKPLQEPIFLQTRSAQVIAGIFVFTALFITCQQIYQHLRWYTNPSEQ 485
           Q +SEI + +  PL E I+L+     V  G+ + T   + C+Q++  L W+T   EQ
Sbjct: 62  QLVSEIPYTL--PLLEAIYLKCELRTVEDGLILPTKE-LCCEQLFCQLVWWTAFCEQ 115


>Z46242-5|CAA86330.2|  364|Caenorhabditis elegans Hypothetical
           protein F35G12.6 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 300 VNITAQRISEIVHDVLKPL--QEPIFLQTRS 386
           V  T QRI+++V ++LK +  QEP F+ T S
Sbjct: 27  VTKTVQRIAKVVQEILKEVEAQEPRFINTLS 57


>U19861-1|AAA97554.2|  364|Caenorhabditis elegans mab-21 protein
           protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 300 VNITAQRISEIVHDVLKPL--QEPIFLQTRS 386
           V  T QRI+++V ++LK +  QEP F+ T S
Sbjct: 27  VTKTVQRIAKVVQEILKEVEAQEPRFINTLS 57


>AF016449-4|AAG23998.3|  330|Caenorhabditis elegans Serpentine
           receptor, class t protein16 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 396 IAGIFVFTALFITCQQIYQHLRWYTNPS 479
           I G++ F A F+T   ++  + W+ +P+
Sbjct: 172 ICGVYFFVATFLTKPVVFNPMSWFFDPN 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,912,018
Number of Sequences: 27780
Number of extensions: 278195
Number of successful extensions: 730
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)