Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt8a01
         (266 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622     28   1.2  
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272...    27   2.1  
01_07_0358 + 43039613-43039677,43039742-43039807,43039918-43040029     26   4.8  
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135...    25   6.3  

>05_04_0118 - 18162934-18162982,18163246-18163357,18163583-18163622
          Length = 66

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
 Frame = +2

Query: 17  RFQLSGNSGRKHSRCCTSILRKFSGR------QHCVTVDCCC 124
           R      +G+K  RCC S  R+ + R      + C+   CCC
Sbjct: 17  RLDSEQQAGKKKGRCCGSSCRRSTKRGETSFIEGCIAALCCC 58


>12_01_0357 +
           2720860-2721066,2721169-2721384,2721481-2723608,
           2723699-2724124,2724242-2724546,2724660-2724823,
           2724899-2724980
          Length = 1175

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 5   GSRARFQLSGNSGRKHSRCCTS 70
           GSRA F+   NS +KHS+ C +
Sbjct: 865 GSRALFEGGFNSSQKHSKSCAA 886


>01_07_0358 +
          43039613-43039677,43039742-43039807,43039918-43040029
          Length = 80

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 71 CLCSSGCASCRYS 33
          C C +GC  C+YS
Sbjct: 14 CQCGNGCGGCKYS 26


>03_03_0229 -
           15612829-15612897,15612982-15613083,15613503-15613553,
           15613637-15613706,15613816-15613984,15614217-15614326,
           15614443-15614510,15615412-15615480,15616649-15616692,
           15616803-15617050,15617620-15617633
          Length = 337

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +2

Query: 35  NSGRKHSRCCTSILRKFSGR 94
           N+GR+H+  C+S L ++ GR
Sbjct: 200 NNGRQHTGSCSSPLTRYLGR 219


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,367,100
Number of Sequences: 37544
Number of extensions: 134788
Number of successful extensions: 292
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 292
length of database: 14,793,348
effective HSP length: 67
effective length of database: 12,277,900
effective search space used: 257835900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)