Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt8a01
(266 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical... 29 0.45
Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical pr... 26 4.2
AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical ... 26 4.2
AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical ... 26 4.2
Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical pr... 25 7.4
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z77662-4|CAB01193.1| 248|Caenorhabditis elegans Hypothetical pr... 25 9.7
Z49131-4|CAA88977.2| 263|Caenorhabditis elegans Hypothetical pr... 25 9.7
U50310-4|ABB51170.1| 409|Caenorhabditis elegans Hypothetical pr... 25 9.7
U50310-3|AAA92540.4| 411|Caenorhabditis elegans Hypothetical pr... 25 9.7
U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium) v... 25 9.7
U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium) v... 25 9.7
U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium) v... 25 9.7
AY150829-1|AAN75511.1| 477|Caenorhabditis elegans KVS-2 protein. 25 9.7
AF541979-1|AAO65852.1| 490|Caenorhabditis elegans KVS-1 protein. 25 9.7
AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical ... 25 9.7
AC006611-1|AAK85455.2| 348|Caenorhabditis elegans Vacuolar h at... 25 9.7
>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
protein Y45F10B.10 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 0.45
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 131 YHGSSSQL*HNAAGH*ISVVCLCSSGCAS 45
YH +S QL GH +V CLCSS +S
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCSSNDSS 924
>Z93339-1|CAB07544.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 199 EKVRSWSDVENG*CLASPHGVGATMAAAVN 110
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>Z70203-7|CAA94110.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 199 EKVRSWSDVENG*CLASPHGVGATMAAAVN 110
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AL023825-2|CAA19443.1| 2105|Caenorhabditis elegans Hypothetical
protein Y16B4A.2 protein.
Length = 2105
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 199 EKVRSWSDVENG*CLASPHGVGATMAAAVN 110
E V SW+ N L SPH VG + + N
Sbjct: 581 ENVHSWNKFANVLYLESPHQVGYSYSTVAN 610
>AF039038-6|AAK21431.2| 629|Caenorhabditis elegans Hypothetical
protein K06A5.1 protein.
Length = 629
Score = 25.8 bits (54), Expect = 4.2
Identities = 11/14 (78%), Positives = 12/14 (85%)
Frame = +2
Query: 2 SGSRARFQLSGNSG 43
S SR RF+LSGNSG
Sbjct: 308 SRSRGRFELSGNSG 321
>Z81460-5|CAB03832.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +2
Query: 53 SRCCTSILRKFSGRQHCVTVDCC 121
+ CC K G C + DCC
Sbjct: 402 NHCCNGSTCKLIGEAECASGDCC 424
>Z70209-3|CAA94147.1| 952|Caenorhabditis elegans Hypothetical
protein C04A11.4 protein.
Length = 952
Score = 25.0 bits (52), Expect = 7.4
Identities = 8/23 (34%), Positives = 10/23 (43%)
Frame = +2
Query: 53 SRCCTSILRKFSGRQHCVTVDCC 121
+ CC K G C + DCC
Sbjct: 402 NHCCNGSTCKLIGEAECASGDCC 424
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical
protein K10C2.1 protein.
Length = 2314
Score = 25.0 bits (52), Expect = 7.4
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -2
Query: 199 EKVRSWSDVENG*CLASPHGVG-ATMAAAVNCDTM 98
E V SW+ N L SP GVG + ++N DT+
Sbjct: 654 ENVYSWNKAANVIFLESPRGVGFSVQDPSLNNDTI 688
>Z77662-4|CAB01193.1| 248|Caenorhabditis elegans Hypothetical
protein F47B8.4 protein.
Length = 248
Score = 24.6 bits (51), Expect = 9.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 264 FFLHRIDKFIKNLNAF 217
FF+ +++K I NLN F
Sbjct: 86 FFIEKVEKLINNLNPF 101
>Z49131-4|CAA88977.2| 263|Caenorhabditis elegans Hypothetical
protein ZC373.5 protein.
Length = 263
Score = 24.6 bits (51), Expect = 9.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Frame = -3
Query: 153 HHLMAWGLPWQQQSTVTQC 97
H L WG W+ +T+C
Sbjct: 200 HGLFVWGPTWESTKIMTEC 218
>U50310-4|ABB51170.1| 409|Caenorhabditis elegans Hypothetical
protein ZC487.1b protein.
Length = 409
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 35 NSGRKHSRCCTS---ILRKFSGRQ-HCVTVDCCCHGSPHAMR*C*TSPVLDIAPGSDLFC 202
+ G + S C+S IL S + H ++C + P+A+ + DI PG + FC
Sbjct: 165 DDGHEFSAVCSSSDGILGCISAIETHRSVLECIQNQQPYALEYLSANQTRDIFPGLESFC 224
>U50310-3|AAA92540.4| 411|Caenorhabditis elegans Hypothetical
protein ZC487.1a protein.
Length = 411
Score = 24.6 bits (51), Expect = 9.7
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Frame = +2
Query: 35 NSGRKHSRCCTS---ILRKFSGRQ-HCVTVDCCCHGSPHAMR*C*TSPVLDIAPGSDLFC 202
+ G + S C+S IL S + H ++C + P+A+ + DI PG + FC
Sbjct: 167 DDGHEFSAVCSSSDGILGCISAIETHRSVLECIQNQQPYALEYLSANQTRDIFPGLESFC 226
>U28734-4|AAR30209.1| 477|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
c protein.
Length = 477
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 205 KTEKVRSWSDVENG*CLASPHGV 137
K+E++ +WS VEN + PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275
>U28734-3|AAR25654.1| 495|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
b protein.
Length = 495
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 205 KTEKVRSWSDVENG*CLASPHGV 137
K+E++ +WS VEN + PH +
Sbjct: 258 KSERISNWSIVENENIIWEPHPI 280
>U28734-2|AAB52604.3| 490|Caenorhabditis elegans K (potassium)
voltage-gated sensorychannel subunit protein 1, isoform
a protein.
Length = 490
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 205 KTEKVRSWSDVENG*CLASPHGV 137
K+E++ +WS VEN + PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275
>AY150829-1|AAN75511.1| 477|Caenorhabditis elegans KVS-2 protein.
Length = 477
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 205 KTEKVRSWSDVENG*CLASPHGV 137
K+E++ +WS VEN + PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275
>AF541979-1|AAO65852.1| 490|Caenorhabditis elegans KVS-1 protein.
Length = 490
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -2
Query: 205 KTEKVRSWSDVENG*CLASPHGV 137
K+E++ +WS VEN + PH +
Sbjct: 253 KSERISNWSIVENENIIWEPHPI 275
>AF026203-1|AAB71246.2| 506|Caenorhabditis elegans Hypothetical
protein E03E2.1 protein.
Length = 506
Score = 24.6 bits (51), Expect = 9.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -3
Query: 99 CCRPLNFRSMLVQQRLCFLP 40
C RP F ++ QQR F+P
Sbjct: 419 CFRPSRFENLTEQQRKAFMP 438
>AC006611-1|AAK85455.2| 348|Caenorhabditis elegans Vacuolar h
atpase protein 16 protein.
Length = 348
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 142 HEVMLNITRSRHRSRIGPFLFYLELK 219
HEV LN+ H+ G F +++LK
Sbjct: 294 HEVKLNVHSYLHQFHFGVFYAFIKLK 319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,026,211
Number of Sequences: 27780
Number of extensions: 107469
Number of successful extensions: 198
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 12,740,198
effective HSP length: 67
effective length of database: 10,878,938
effective search space used: 228457698
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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