Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7p24
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0480 + 34218403-34218405,34219071-34219127,34220047-342203...    50   1e-06
03_06_0479 + 34217170-34217172,34217337-34217786                       50   1e-06
12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666     50   2e-06
02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393     42   5e-04
07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318     41   7e-04
04_04_0752 - 27791126-27791167,27791792-27791863,27792771-277928...    41   0.001
10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378     39   0.004
05_01_0103 + 686770-687017,687120-687270                               38   0.006
07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084     35   0.059
03_05_1112 + 30488678-30488806,30489047-30489228,30489310-304895...    28   5.2  
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754...    27   9.0  

>03_06_0480 +
           34218403-34218405,34219071-34219127,34220047-34220312,
           34220402-34220552
          Length = 158

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
 Frame = +3

Query: 435 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKG 608
           +SGV + D CK  + E++  + HR++ F + ++ K+I V+ +G+R   YE F   L +G
Sbjct: 24  SSGVAIHDDCKLKFNELQSKRMHRFITFMMDNKGKEIIVDKIGDRTTSYEDFTSSLPEG 82


>03_06_0479 + 34217170-34217172,34217337-34217786
          Length = 150

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
 Frame = +3

Query: 438 SGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDLQKGG 611
           SGV VS+ CK  ++E++  + HR+VVF I D  +Q+ V+ VG R+A +++    L   G
Sbjct: 6   SGVAVSEECKARFQELRAGRAHRFVVFKIDDAMRQVVVDRVGPRDAGFDELTASLPADG 64


>12_02_1198 - 26922570-26922720,26922893-26923158,26923646-26923666
          Length = 145

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = +3

Query: 435 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 599
           +SG+ V+  CK T+ E+++ K HRYV+F I D+ K++ VE  G     ++ F++ L
Sbjct: 11  SSGIGVAAECKQTFLELQRKKSHRYVIFKIDDKCKEVVVEKTGSSTESFDDFMDSL 66


>02_05_0221 - 26938764-26938914,26940039-26940361,26940391-26940393
          Length = 158

 Score = 41.5 bits (93), Expect = 5e-04
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
 Frame = +3

Query: 435 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 587
           ASG+ V D CK  + E+K  +  R++VF I ++ +Q+ V+ +G+    Y+ F
Sbjct: 24  ASGMAVCDECKLKFLELKAKRSFRFIVFKINEKVQQVVVDRLGQPGESYDDF 75


>07_03_0397 + 17686852-17686888,17687452-17687701,17688168-17688318
          Length = 145

 Score = 41.1 bits (92), Expect = 7e-04
 Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 441 GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 599
           G+ V+D CK  ++E+K  +  R++VF I D+  +I VE +G+    YE F   L
Sbjct: 13  GLAVNDECKFKFQELKTRRGFRFIVFKIDDKAMEIKVERLGQTAEGYEDFAATL 66


>04_04_0752 -
           27791126-27791167,27791792-27791863,27792771-27792855,
           27792971-27793236,27794117-27794301,27794925-27795018,
           27795193-27795284,27795401-27795539,27796101-27796385
          Length = 419

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 435 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQF 587
           ASG+ V D CK  ++E+K  +  R++ F I +  +Q+ V+ +G+    Y+ F
Sbjct: 269 ASGMAVGDECKLKFQELKSKRSFRFITFKIDERTQQVVVDRLGQPGDTYDDF 320


>10_08_0658 - 19642103-19642259,19642831-19643102,19643346-19643378
          Length = 153

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 444 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 599
           + V +  K+ + E+K+ K HRYV+F I D + +I VE  G     Y+ F   L
Sbjct: 20  IEVPEKSKSAFWELKRRKVHRYVIFKIDDRREEIVVEKTGAPGESYDDFTASL 72


>05_01_0103 + 686770-687017,687120-687270
          Length = 132

 Score = 37.9 bits (84), Expect = 0.006
 Identities = 17/53 (32%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
 Frame = +3

Query: 444 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQ-IDVETVGERNAEYEQFLEDL 599
           + V D CK  + E+K  + +R++++ I ++K+ + VE VGE    Y+ F   L
Sbjct: 1   MAVDDECKLKFLELKAKRTYRFIIYKIDEKKKMVVVEKVGEPVLNYDDFAASL 53


>07_02_0007 - 11675832-11675988,11676719-11676975,11676989-11677084
          Length = 169

 Score = 34.7 bits (76), Expect = 0.059
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 444 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEK-QIDVETVGERNAEYEQFLEDL 599
           + V +  K+ + E+ + K HRYV+F I D + +I VE  G     Y+ F   L
Sbjct: 40  IEVPEKSKSAFWELMRRKVHRYVIFKIDDRREEIVVEKTGAPWESYDDFTASL 92


>03_05_1112 +
           30488678-30488806,30489047-30489228,30489310-30489505,
           30490095-30491117
          Length = 509

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +3

Query: 471 TYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTG 617
           T +++ +D+    +  ++  EK  D E + E NA YE+ +  L+  G G
Sbjct: 140 TKQKVAEDENRNLIDRWML-EKMKDAERLNEANAMYEEMVLKLKSAGVG 187


>05_07_0055 -
           27374028-27374080,27374205-27374295,27374930-27375448,
           27375544-27375779,27376363-27376846,27376993-27378282
          Length = 890

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -2

Query: 480 LRKWSCKRPKLSHQTP 433
           L +W C RPK  H TP
Sbjct: 54  LEEWQCARPKTRHPTP 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,272,020
Number of Sequences: 37544
Number of extensions: 228789
Number of successful extensions: 520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)