Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7p07
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.7
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 27 1.7
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 27 1.7
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 27 1.7
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.9
SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 2.9
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 3.8
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 26 5.1
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 26 5.1
SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomy... 25 6.7
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 8.9
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 8.9
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.9
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 25 8.9
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 25 8.9
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 419
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 419
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 419
L +W L FSK++ Q ++CL F L Q +
Sbjct: 83 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 117
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 318 LKHWTQN-LQFSKLVMKKQAIVCLIHFCIQLKQLM 419
L +W L FSK++ Q ++CL F L Q +
Sbjct: 111 LSYWIWTCLHFSKIIFPAQKVICLYIFLFALNQTL 145
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -2
Query: 196 RCLNLFIYFGIFFLSLS 146
RCL LF +F +FFLS S
Sbjct: 114 RCLLLFFFFLLFFLSFS 130
>SPCC24B10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 199
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +2
Query: 329 DTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFY 436
+ + +K Y++TG V ++ L I DDL +Y
Sbjct: 112 EARLQAVKLAYQKTGRIVYDAPLQNIHNWDDLYNYY 147
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 26.2 bits (55), Expect = 3.8
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
Frame = +2
Query: 107 SPLRRGSFQVTSIR----QAQKKYPKVDKKVQAAAESLAARGFLRPTKSWDPPTNINETI 274
S LR G T I+ +Q K+ + K A+ +LAA G + +S++PP ++++
Sbjct: 1447 SKLRLGPLLTTVIKLVIEYSQAKHAAIILK-DASNYTLAAHGNVEKAESFEPPVILSQSD 1505
Query: 275 LKI 283
+KI
Sbjct: 1506 VKI 1508
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = +2
Query: 353 ACYEETGHSVPNSLL--HTIETVDDLTEFYKTPVYTTTP 463
ACY + + + L +T+ T T F TP TTTP
Sbjct: 913 ACYNPSQYVCSDGSLSPNTVTTTKATTTFTPTPTTTTTP 951
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 25.8 bits (54), Expect = 5.1
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Frame = +2
Query: 278 KICATCGLNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYK-----T 442
+ C C S F L +KF + + YE + +SLL+ T+ ++ E +
Sbjct: 212 EFCQICEREIQSWFFELHSKFCLSTSTYESVVQAAQDSLLYFRSTLLEIQEGMQKDSSLV 271
Query: 443 PVYTTTP 463
PVY P
Sbjct: 272 PVYKNEP 278
>SPBC1289.13c |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -1
Query: 503 VDFWVDPLTSEHQTV*LCTQVFCKILLGHQL 411
+DFW +PL EH V + Q ++ H +
Sbjct: 266 LDFWNEPLYKEHNGVFVEQQALSHMIYSHPI 296
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +3
Query: 498 IYMFKKIMLDFIQIRTLYSMASPLFRRVR 584
+Y F + + IR +Y+ LFRR+R
Sbjct: 233 MYQFPYVSVPIYSIRQMYTCFYSLFRRIR 261
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 299 LNGNSEFEALDTKFTVLKACYEETGHSVPNSLLHTIETVDDLTEFYKTPV 448
LN N E + K ++ ++ HS+ S L +++ + D+T + + V
Sbjct: 49 LNSNKTTEGEEAKLSIY-----DSSHSISKSQLESVKKISDITGYNEAQV 93
>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 862
Score = 25.0 bits (52), Expect = 8.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = +2
Query: 140 SIRQAQKKYPKVDKKVQAAAESLAARGFLRPTKSWDPPTN 259
++R+A +P VD + + ++ + +RPT PP N
Sbjct: 745 AVREADVYHPHVDTSIDSLSQISSQPFEMRPTAIPPPPKN 784
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 25.0 bits (52), Expect = 8.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 512 KDYVRFHPDTDTLFNGVSA 568
KDYV++ PD++ L + VSA
Sbjct: 211 KDYVQYLPDSEILLDMVSA 229
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 8.9
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Frame = +2
Query: 386 NSLLHTIETVDDLTEFYKTPVYTTTPFDAL-KLMDLPKNLHVQKDYVRFHPDTDTLF 553
NS I +D L E+ + F + KL+D LHV + V HP + TLF
Sbjct: 58 NSTTPCIYALDSLLEYQQNEEAYEKNFQFIQKLID--DLLHVIEGLVLIHPKSQTLF 112
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,665,139
Number of Sequences: 5004
Number of extensions: 55865
Number of successful extensions: 148
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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