Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7p07
         (623 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134...    31   0.98 
10_08_0305 - 16644276-16644290,16644611-16645258,16646764-166468...    30   1.3  
11_04_0443 - 17808897-17809110,17809169-17813652                       29   4.0  
09_06_0309 - 22206812-22206884,22207008-22207103,22207531-222076...    28   5.2  
05_06_0118 + 25735966-25737601,25737698-25738488                       28   5.2  
08_02_1331 + 26195949-26196132,26196606-26196710,26197270-261981...    27   9.2  
02_05_1015 + 33512023-33512359,33513550-33514082                       27   9.2  

>04_01_0126 -
           1340540-1341376,1341437-1341900,1342105-1342156,
           1342225-1342799,1343596-1343703,1345823-1346155,
           1346783-1349306
          Length = 1630

 Score = 30.7 bits (66), Expect = 0.98
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = +2

Query: 359 YEETGHSVPNSLLHTIETVDDLTEFYKTPVYTTTPFDALKLMDLPK 496
           YEE  H+  N     +  +   +  YK  ++ T+PF A+K++DL K
Sbjct: 644 YEELYHATENFNERNLVGIGSFSSVYKAVLHATSPF-AVKVLDLNK 688


>10_08_0305 -
           16644276-16644290,16644611-16645258,16646764-16646865,
           16646980-16647111,16647574-16648242
          Length = 521

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -1

Query: 521 HNLFEHVDFWVDPLTSEHQTV*LCTQVFCKILLGHQLFQLYAKVN 387
           HNL + V  + D    E Q    C+QVFC +L+   L  LY+K N
Sbjct: 198 HNLPDEVTLFEDHKCPEEQIPSKCSQVFCGVLIFQIL--LYSKRN 240


>11_04_0443 - 17808897-17809110,17809169-17813652
          Length = 1565

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +1

Query: 499 STCSKRLC*ISSRYGHFIQWRLRFSEEFDYCNR 597
           S  S RLC ISS +  +IQW + +++EF  CN+
Sbjct: 449 SQSSGRLC-ISS-HKKYIQWLISWNQEFPSCNQ 479


>09_06_0309 -
           22206812-22206884,22207008-22207103,22207531-22207619,
           22207738-22207820,22207932-22208048,22208132-22208319,
           22208430-22208500,22208570-22208782,22210022-22210081,
           22210186-22210476,22210590-22211894
          Length = 861

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 443 PVYTTTPFDALKLMDLPKNLHVQKDYVRFH 532
           P +   PFD L   D+ + LH   D+ RFH
Sbjct: 37  PPWADLPFDLLA--DISRRLHATADFARFH 64


>05_06_0118 + 25735966-25737601,25737698-25738488
          Length = 808

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
 Frame = +2

Query: 239 SWDPPTNINETILKICATCGLNGNSE----FEALDTKFTVLKACYEETGHSVPNS 391
           ++DP +   ETI+ I  TC    N +    F +    FT +    +E G S P S
Sbjct: 381 AYDPVSRTLETIVSIMVTCSAYQNEKSDIRFSSFTKSFTPVHRTRKEIGFSTPLS 435


>08_02_1331 +
           26195949-26196132,26196606-26196710,26197270-26198127,
           26198669-26199458,26200240-26200329,26200636-26200712,
           26200797-26201383
          Length = 896

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +3

Query: 228 VPPSHGIHLQTSMKQF*KYVQHVD*MEIQNLKHWTQNLQFSKLVMK 365
           +PP   IHL   ++ F K + HV   EI ++  + Q+ +F    M+
Sbjct: 305 LPPVLTIHLMRYLEDFKKVIGHVSFKEILDVGQFIQDSEFEGYSMQ 350


>02_05_1015 + 33512023-33512359,33513550-33514082
          Length = 289

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 230 PTKSWDPPTNINETILKICATCGLNGN 310
           P+ S DP  + +  +L +C TCG  G+
Sbjct: 119 PSASGDPLASKSGAVLMVCRTCGKKGD 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,222,022
Number of Sequences: 37544
Number of extensions: 323089
Number of successful extensions: 722
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)