Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt7p07
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    24   1.4  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   9.8  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +3

Query: 39  NYKYNKTDXXXXXXXXXCSEMYYHPYVVEVSR 134
           NYKYN  +           ++YY  Y++ + +
Sbjct: 95  NYKYNYNNKYNYNNNNYNKKLYYKNYIINIEQ 126


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -3

Query: 150 CLIDVTWKLP 121
           CL+DV W++P
Sbjct: 288 CLLDVQWRIP 297


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +1

Query: 88  NAQKCIITLTSWKFPG 135
           + Q C++ L SW + G
Sbjct: 163 DVQTCVLKLGSWTYDG 178


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = +1

Query: 94  QKCIITLTSWKFPGH 138
           Q+C++   SW + G+
Sbjct: 143 QRCVLKWASWTYDGY 157


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = -1

Query: 518 NLFEHVDFWVDPLTSEHQTV*LCTQVFCKILLGH 417
           +L  H  F ++P   +HQ V +  Q+   +  GH
Sbjct: 242 HLEAHCYFDIEPTVQQHQPVTVNRQLNSDVQPGH 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,603
Number of Sequences: 438
Number of extensions: 3512
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)