Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt7p06
(412 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical ... 29 1.3
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 28 2.3
U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical pr... 28 2.3
U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical pr... 28 2.3
AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical ... 27 5.3
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 27 7.0
U56966-1|AAA98717.1| 208|Caenorhabditis elegans Ets class trans... 27 7.0
U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical pr... 27 7.0
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z79601-3|CAB01883.2| 640|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 26 9.2
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 26 9.2
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 26 9.2
U88169-3|AAK68396.1| 345|Caenorhabditis elegans Hypothetical pr... 26 9.2
U88169-2|AAB42234.1| 342|Caenorhabditis elegans Hypothetical pr... 26 9.2
U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine r... 26 9.2
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 26 9.2
>AF024500-2|AAB70360.1| 467|Caenorhabditis elegans Hypothetical
protein K06H6.4 protein.
Length = 467
Score = 29.1 bits (62), Expect = 1.3
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +1
Query: 88 GKKTH*WVLSSTDSTSSKLILPGSWYTTATPQVTQALLEHCRSD--CTYWSC 237
G + H W S+TD T + P S + T T + L + S C Y+ C
Sbjct: 70 GIRNHNWKPSTTDLTKVAALPPESLFNTTTDENEDPLFAYNSSTMYCRYYDC 121
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical protein
D2085.1 protein.
Length = 2198
Score = 28.3 bits (60), Expect = 2.3
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 1 ESLKI*RPKWRDSENVQIYESF 66
ESLKI +P+W+ SEN++ ++F
Sbjct: 1058 ESLKISQPQWKKSENMEDAKNF 1079
>U52003-8|AAM97990.1| 441|Caenorhabditis elegans Hypothetical
protein ZK381.5b protein.
Length = 441
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 163 YTTATPQVTQALLE-HCRSDCTYWSCCCLCQTQSRGPKLVRV 285
+++ TP ++Q L H ++C CCC+C G K RV
Sbjct: 198 FSSDTPHMSQGDLHWHASAECF---CCCVCSKNLLGVKYSRV 236
>U52003-7|AAM97989.1| 555|Caenorhabditis elegans Hypothetical
protein ZK381.5a protein.
Length = 555
Score = 28.3 bits (60), Expect = 2.3
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 163 YTTATPQVTQALLE-HCRSDCTYWSCCCLCQTQSRGPKLVRV 285
+++ TP ++Q L H ++C CCC+C G K RV
Sbjct: 312 FSSDTPHMSQGDLHWHASAECF---CCCVCSKNLLGVKYSRV 350
>AC024744-4|AAK72071.3| 1192|Caenorhabditis elegans Hypothetical
protein Y108G3AL.7 protein.
Length = 1192
Score = 27.1 bits (57), Expect = 5.3
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = +1
Query: 34 DSENVQIYESFIEC*ISFGKKTH*WVLSSTDS-TSSKLILPGSWYTTATPQVTQALLEHC 210
+ E I+++F+E ++ K W + S T K++LPG Y+ + + TQA++
Sbjct: 755 EEELKTIFKNFLESYLAINTKLS-WPMESLQPRTERKVVLPGQ-YSESRKKRTQAIMSQV 812
Query: 211 RSDCT 225
++ T
Sbjct: 813 QTPPT 817
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 26.6 bits (56), Expect = 7.0
Identities = 16/35 (45%), Positives = 17/35 (48%)
Frame = +2
Query: 17 DGPSGEIPKMYKFTNHLSNAKLVLVRRHIDGSSAA 121
D P G P Y F HLSN VL+R DG A
Sbjct: 770 DFPIG--PPGYGFPEHLSNLDEVLIRAQGDGECPA 802
>U56966-1|AAA98717.1| 208|Caenorhabditis elegans Ets class
transcription factorprotein 5 protein.
Length = 208
Score = 26.6 bits (56), Expect = 7.0
Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 109 VLSSTDSTSSKLILPGSWYT-TATPQ 183
+LSST STSS I+P S T +TPQ
Sbjct: 171 ILSSTSSTSSNQIIPPSTATYWSTPQ 196
>U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical
protein K02E10.1 protein.
Length = 218
Score = 26.6 bits (56), Expect = 7.0
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 59 NHLSNAKLVLVRRHIDGSSAALIVLRQNSYSQDH 160
NHL K+V+V H G S L+ +NS+ DH
Sbjct: 4 NHLF--KIVVVGDHNCGKSCILLRFAENSFRMDH 35
>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical
protein H08M01.2b protein.
Length = 1341
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 109 VLSSTDSTSSKLILPGSWYTTATPQVTQALLEHCRSDCTYWSCCCLCQTQSRGPKLVRVK 288
VLS+ +S++S +++ + T T + C Y CC QSR + K
Sbjct: 84 VLSNPESSASNILIRVAEQTEFLDDETFETIAGCSKSENYCQRCCQTSLQSRDKLMYIQK 143
Query: 289 CPLG 300
LG
Sbjct: 144 EQLG 147
>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical
protein H08M01.2a protein.
Length = 1320
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +1
Query: 109 VLSSTDSTSSKLILPGSWYTTATPQVTQALLEHCRSDCTYWSCCCLCQTQSRGPKLVRVK 288
VLS+ +S++S +++ + T T + C Y CC QSR + K
Sbjct: 84 VLSNPESSASNILIRVAEQTEFLDDETFETIAGCSKSENYCQRCCQTSLQSRDKLMYIQK 143
Query: 289 CPLG 300
LG
Sbjct: 144 EQLG 147
>Z79601-3|CAB01883.2| 640|Caenorhabditis elegans Hypothetical
protein K09A9.1 protein.
Length = 640
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 250 QTQSRGPKLVRVKCPLGQ*PGSSRLPGEVFTVEVYSGPFQ 369
Q Q R P+LV++KC LPG+++ + + P Q
Sbjct: 559 QKQHRAPRLVQLKC--SDISKELLLPGDIYPISEHYHPSQ 596
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 17 DGPSGEIPKMYKFTNHLSNAKLVLVRRHI 103
D P+ +P+M+K +H+ RRH+
Sbjct: 3709 DEPTNRVPQMFKHLDHVLQTDRESARRHL 3737
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 17 DGPSGEIPKMYKFTNHLSNAKLVLVRRHI 103
D P+ +P+M+K +H+ RRH+
Sbjct: 3720 DEPTNRVPQMFKHLDHVLQTDRESARRHL 3748
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 17 DGPSGEIPKMYKFTNHLSNAKLVLVRRHI 103
D P+ +P+M+K +H+ RRH+
Sbjct: 3720 DEPTNRVPQMFKHLDHVLQTDRESARRHL 3748
>U88169-3|AAK68396.1| 345|Caenorhabditis elegans Hypothetical
protein T03F1.6b protein.
Length = 345
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 269 RNWLES-NVPWANDLVALVYQEKSSPWKFTVDRFNQATTSISHF 397
R +LES + + N L A+ +E VD F+ T ++ HF
Sbjct: 252 RRFLESLTIEFGNSLKAVTEEEMKRVLLCHVDEFHHTTPNLQHF 295
>U88169-2|AAB42234.1| 342|Caenorhabditis elegans Hypothetical
protein T03F1.6a protein.
Length = 342
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 269 RNWLES-NVPWANDLVALVYQEKSSPWKFTVDRFNQATTSISHF 397
R +LES + + N L A+ +E VD F+ T ++ HF
Sbjct: 252 RRFLESLTIEFGNSLKAVTEEEMKRVLLCHVDEFHHTTPNLQHF 295
>U53337-6|AAA96188.2| 510|Caenorhabditis elegans Acetylcholine
receptor protein 10 protein.
Length = 510
Score = 26.2 bits (55), Expect = 9.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 23 PSGEIPKMYKFTNHLSNAKLVLVRRHIDGSSAALIVLRQNSYSQ 154
P + KM++ H+ + VL +R SS+ R+NS SQ
Sbjct: 351 PKPLLKKMHRLVQHIHQSNFVLFKRSRRTSSSRQKSRRRNSKSQ 394
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 26.2 bits (55), Expect = 9.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 17 DGPSGEIPKMYKFTNHLSNAKLVLVRRHI 103
D P+ +P+M+K +H+ RRH+
Sbjct: 3720 DEPTNRVPQMFKHLDHVLQTDRESARRHL 3748
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,979
Number of Sequences: 27780
Number of extensions: 184507
Number of successful extensions: 472
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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